ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	MEKK1	MAPK/ERK kinase kinase 1
ath-u.5	MEKK1	MAPK/ERK kinase kinase 1
ath-r.7	MEKK1	MAPK/ERK kinase kinase 1
ath-m.9	MEKK1	MAPK/ERK kinase kinase 1
ath-e.2	MEKK1	MAPK/ERK kinase kinase 1
ath-m.4.bio	MEKK1	MAPK/ERK kinase kinase 1
ath-m.4.hor	MEKK1	MAPK/ERK kinase kinase 1
ath-m.4.lig	MEKK1	MAPK/ERK kinase kinase 1
ath-m.4.str	MEKK1	MAPK/ERK kinase kinase 1
ath-u.5	MEKK3	MAPK/ERK kinase kinase 3
ath-u.5	MAPKKK9	mitogen-activated protein kinase kinase kinase 9
bra-r.6	103871108	mitogen-activated protein kinase kinase kinase 1
bra-r.6	103858480	mitogen-activated protein kinase kinase kinase 1
bra-r.6	103838792	mitogen-activated protein kinase kinase kinase 1
bna-r.1	111213496	mitogen-activated protein kinase kinase kinase 1
bna-r.1	106345807	mitogen-activated protein kinase kinase kinase 1-like
bna-r.1	106367654	mitogen-activated protein kinase kinase kinase 1
ghi-r.1	107924332	mitogen-activated protein kinase kinase kinase 1
ghi-r.1	107910263	mitogen-activated protein kinase kinase kinase 1
ghi-r.1	107951438	mitogen-activated protein kinase kinase kinase 1
cit-r.1	102625693	mitogen-activated protein kinase kinase kinase 1-like
cit-r.1	102609376	mitogen-activated protein kinase kinase kinase 1
cit-r.1	102609173	mitogen-activated protein kinase kinase kinase 1-like
gma-u.5	100820552	mitogen-activated protein kinase kinase kinase 1
gma-u.5	100819999	mitogen-activated protein kinase kinase kinase 1
gma-u.5	100819177	mitogen-activated protein kinase kinase kinase 1
vvi-u.5	100241228	mitogen-activated protein kinase kinase kinase 1
ppo-u.5	7460930	mitogen-activated protein kinase kinase kinase 1
ppo-u.5	7463181	mitogen-activated protein kinase kinase kinase 1
mtr-u.5	11436045	mitogen-activated protein kinase kinase kinase 1
mtr-u.5	25493333	mitogen-activated protein kinase kinase kinase 1
mtr-u.5	11419987	mitogen-activated protein kinase kinase kinase 1
sly-u.5	101264342	mitogen-activated protein kinase kinase kinase 1-like
sly-u.5	101263165	mitogen-activated protein kinase kinase kinase 1-like
sot-r.1	102593900	mitogen-activated protein kinase kinase kinase 1-like
sot-r.1	102597910	mitogen-activated protein kinase kinase kinase 1-like
nta-r.1	107766395	mitogen-activated protein kinase kinase kinase 1
nta-r.1	107804021	mitogen-activated protein kinase kinase kinase 1-like
nta-r.1	107806104	mitogen-activated protein kinase kinase kinase 1
osa-u.5	4330859	mitogen-activated protein kinase kinase kinase 1
osa-u.5	9271851	mitogen-activated protein kinase kinase kinase 1
osa-u.5	4332325	mitogen-activated protein kinase kinase kinase 1
zma-u.5	100275358	putative MAP kinase superfamily protein
zma-u.5	100272734	uncharacterized LOC100272734
zma-u.5	100383481	putative MAP kinase superfamily protein
tae-r.2	123085355	mitogen-activated protein kinase kinase kinase 1
tae-r.2	123083936	mitogen-activated protein kinase kinase kinase 1b
tae-r.2	123092689	mitogen-activated protein kinase kinase kinase 1
hvu-r.1	123403898	mitogen-activated protein kinase kinase kinase 1-like
hvu-r.1	123449095	mitogen-activated protein kinase kinase kinase 1-like
hvu-r.1	123450189	uncharacterized LOC123450189
sbi-r.1	8063411	uncharacterized LOC8063411
sbi-r.1	8078939	mitogen-activated protein kinase kinase kinase 3
sbi-r.1	8054301	mitogen-activated protein kinase kinase kinase 1
bdi-r.1	100825446	mitogen-activated protein kinase kinase kinase 1
bdi-r.1	100826299	uncharacterized LOC100826299
bdi-r.1	100826357	mitogen-activated protein kinase kinase kinase 1

Top 50 coexpressed genes to MEKK1 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to MEKK1 (ath-m.4.tis coexpression data)

CoexMap"826409"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04016 [list] [network] MAPK signaling pathway - plant (146 genes)

ath04626 [list] [network] Plant-pathogen interaction (216 genes)

GO BP

GO:1902065 [list] [network] response to L-glutamate	(5 genes)	IMP
GO:0000165 [list] [network] MAPK cascade	(13 genes)	IMP
GO:0010449 [list] [network] root meristem growth	(16 genes)	IGI
GO:0009631 [list] [network] cold acclimation	(60 genes)	IDA
GO:0046686 [list] [network] response to cadmium ion	(81 genes)	IGI
GO:0046777 [list] [network] protein autophosphorylation	(119 genes)	HDA
GO:0009611 [list] [network] response to wounding	(271 genes)	IDA
GO:0009409 [list] [network] response to cold	(436 genes)	IDA IEP
GO:0009651 [list] [network] response to salt stress	(473 genes)	IEP
GO:0006970 [list] [network] response to osmotic stress	(578 genes)	IEP IGI
GO:0022622 [list] [network] root system development	(602 genes)	IMP

GO CC

GO:0005768 [list] [network] endosome	(359 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM

GO MF

GO:0004709 [list] [network] MAP kinase kinase kinase activity	(10 genes)	IDA ISS
GO:0019900 [list] [network] kinase binding	(112 genes)	IPI
GO:0004674 [list] [network] protein serine/threonine kinase activity	(433 genes)	HDA IDA
GO:0003677 [list] [network] DNA binding	(1274 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_192590.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, mito 2, chlo 1, cysk 1, golg_plas 1

(predict for NP_192590.1)

Subcellular
localization
TargetP

mito 6, other 3

(predict for NP_192590.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for MEKK1	ath-u.5 for MEKK1	ath-r.7 for MEKK1	ath-m.9 for MEKK1	ath-e.2 for MEKK1	ath-m.4.bio for MEKK1	ath-m.4.hor for MEKK1	ath-m.4.lig for MEKK1	ath-m.4.str for MEKK1	ath-u.5 for MEKK3	ath-u.5 for MAPKKK9	bra-r.6 for 103871108	bra-r.6 for 103858480	bra-r.6 for 103838792	bna-r.1 for 111213496	bna-r.1 for 106345807	bna-r.1 for 106367654	ghi-r.1 for 107924332	ghi-r.1 for 107910263	ghi-r.1 for 107951438	cit-r.1 for 102625693	cit-r.1 for 102609376	cit-r.1 for 102609173	gma-u.5 for 100820552	gma-u.5 for 100819999	gma-u.5 for 100819177	vvi-u.5 for 100241228	ppo-u.5 for 7460930	ppo-u.5 for 7463181	mtr-u.5 for 11436045	mtr-u.5 for 25493333	mtr-u.5 for 11419987	sly-u.5 for 101264342	sly-u.5 for 101263165	sot-r.1 for 102593900	sot-r.1 for 102597910	nta-r.1 for 107766395	nta-r.1 for 107804021	nta-r.1 for 107806104	osa-u.5 for 4330859	osa-u.5 for 9271851	osa-u.5 for 4332325	zma-u.5 for 100275358	zma-u.5 for 100272734	zma-u.5 for 100383481	tae-r.2 for 123085355	tae-r.2 for 123083936	tae-r.2 for 123092689	hvu-r.1 for 123403898	hvu-r.1 for 123449095	hvu-r.1 for 123450189	sbi-r.1 for 8063411	sbi-r.1 for 8078939	sbi-r.1 for 8054301	bdi-r.1 for 100825446	bdi-r.1 for 100826299	bdi-r.1 for 100826357

Ortholog

Ortholog ID: 1584

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

MEKK1

MEKK3

MAPKKK9

MEKK

Function^*

MAPK/ERK kinase kinase 1

MAPK/ERK kinase kinase 3

mitogen-activated protein kinase kinase kinase 9