Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-u.5   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-r.7   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-m.9   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-e.2   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-m.4.bio   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-m.4.hor   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-m.4.lig   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 ath-m.4.str   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 bra-r.6   103855795   uncharacterized LOC103855795 
 bra-r.6   103850672   uncharacterized LOC103850672 
 bra-r.6   103847168   uncharacterized LOC103847168 
 bna-r.1   106419327   uncharacterized LOC106419327 
 ghi-r.1   107909000   uncharacterized LOC107909000 
 ghi-r.1   107886924   uncharacterized LOC107886924 
 cit-r.1   102614493   hypothetical protein 
 gma-u.5   100809862   uncharacterized LOC100809862 
 gma-u.5   100804019   uncharacterized LOC100804019 
 vvi-u.5   100250766   uncharacterized LOC100250766 
 ppo-u.5   7468476   uncharacterized LOC7468476 
 mtr-u.5   11419833   uncharacterized LOC11419833 
 sly-u.5   101268332   uncharacterized LOC101268332 
 sot-r.1   102581730   uncharacterized LOC102581730 
 nta-r.1   107820915   uncharacterized LOC107820915 
 nta-r.1   107804349   uncharacterized LOC107804349 
 osa-u.5   4336463   uncharacterized LOC4336463 
 zma-u.5   100382145   uncharacterized LOC100382145 
 tae-r.2   123189833   uncharacterized LOC123189833 
 tae-r.2   123053941   uncharacterized LOC123053941 
 tae-r.2   123046055   uncharacterized LOC123046055 
 hvu-r.1   123427304   uncharacterized LOC123427304 
 sbi-r.1   8082862   uncharacterized LOC8082862 
 bdi-r.1   100830071   uncharacterized LOC100830071 
 cre-r.1   CHLRE_09g402950v5   uncharacterized protein 

close


Top 50 coexpressed genes to AT5G08540 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT5G08540 (ath-m.4.tis coexpression data)

CoexMap"830754"


athAT5G08540 | Entrez gene ID : 830754      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_568200.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_568200.1)
Subcellular
localization
TargetP
chlo 8,  mito 3  (predict for NP_568200.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
AT5G08540
ath-u.5
for
AT5G08540
ath-r.7
for
AT5G08540
ath-m.9
for
AT5G08540
ath-e.2
for
AT5G08540
ath-m.4.bio
for
AT5G08540
ath-m.4.hor
for
AT5G08540
ath-m.4.lig
for
AT5G08540
ath-m.4.str
for
AT5G08540
bra-r.6
for
103855795
bra-r.6
for
103850672
bra-r.6
for
103847168
bna-r.1
for
106419327
ghi-r.1
for
107909000
ghi-r.1
for
107886924
cit-r.1
for
102614493
gma-u.5
for
100809862
gma-u.5
for
100804019
vvi-u.5
for
100250766
ppo-u.5
for
7468476
mtr-u.5
for
11419833
sly-u.5
for
101268332
sot-r.1
for
102581730
nta-r.1
for
107820915
nta-r.1
for
107804349
osa-u.5
for
4336463
zma-u.5
for
100382145
tae-r.2
for
123189833
tae-r.2
for
123053941
tae-r.2
for
123046055
hvu-r.1
for
123427304
sbi-r.1
for
8082862
bdi-r.1
for
100830071
cre-r.1
for
CHLRE_09g402950v5


Ortholog ID: 8122
Species ath bra bra bra bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G08540 LOC103855795 LOC103850672 LOC103847168 LOC106419327 LOC107909000 LOC107886924 LOC102614493 LOC100809862 LOC100804019 LOC100250766 LOC7468476 LOC11419833 LOC101268332 LOC102581730 LOC107820915 LOC107804349 LOC4336463 LOC100382145 LOC123189833 LOC123053941 LOC123046055 LOC123427304 LOC8082862 LOC100830071 CHLRE_09g402950v5
Function* ribosomal RNA small subunit methyltransferase J uncharacterized LOC103855795 uncharacterized LOC103850672 uncharacterized LOC103847168 uncharacterized LOC106419327 uncharacterized LOC107909000 uncharacterized LOC107886924 hypothetical protein uncharacterized LOC100809862 uncharacterized LOC100804019 uncharacterized LOC100250766 uncharacterized LOC7468476 uncharacterized LOC11419833 uncharacterized LOC101268332 uncharacterized LOC102581730 uncharacterized LOC107820915 uncharacterized LOC107804349 uncharacterized LOC4336463 uncharacterized LOC100382145 uncharacterized LOC123189833 uncharacterized LOC123053941 uncharacterized LOC123046055 uncharacterized LOC123427304 uncharacterized LOC8082862 uncharacterized LOC100830071 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00660 C5-Branched dibasic acid metabolism 2
gma01210 2-Oxocarboxylic acid metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00270 Cysteine and methionine metabolism 2
tae00280 Valine, leucine and isoleucine degradation 2
tae00290 Valine, leucine and isoleucine biosynthesis 2
tae00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 6
hvu00290 Valine, leucine and isoleucine biosynthesis 4
hvu01210 2-Oxocarboxylic acid metabolism 4
hvu00660 C5-Branched dibasic acid metabolism 3
hvu00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 3
sbi01240 Biosynthesis of cofactors 2
sbi00261 Monobactam biosynthesis 2
sbi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830754 103855795 103850672 103847168 106419327 107909000 107886924 102614493 100809862 100804019 100250766 7468476 11419833 101268332 102581730 107820915 107804349 4336463 100382145 123189833 123053941 123046055 123427304 8082862 100830071 5720736
The preparation time of this page was 0.1 [sec].