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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   DNMT2   DNA methyltransferase-2 
 ath-u.5   DNMT2   DNA methyltransferase-2 
 ath-r.7   DNMT2   DNA methyltransferase-2 
 ath-m.9   DNMT2   DNA methyltransferase-2 
 ath-e.2   DNMT2   DNA methyltransferase-2 
 ath-m.4.bio   DNMT2   DNA methyltransferase-2 
 ath-m.4.hor   DNMT2   DNA methyltransferase-2 
 ath-m.4.lig   DNMT2   DNA methyltransferase-2 
 ath-m.4.str   DNMT2   DNA methyltransferase-2 
 bra-r.6   103874407   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 bna-r.1   106348535   tRNA (cytosine(38)-C(5))-methyltransferase 2-like 
 bna-r.1   106407360   tRNA (cytosine(38)-C(5))-methyltransferase 2-like 
 ghi-r.1   107907768   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 cit-r.1   102609884   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 gma-u.5   100792567   tRNA (cytosine-5-)-methyltransferase-like 
 vvi-u.5   109121395   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 ppo-u.5   7495763   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 mtr-u.5   11433867   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 sly-u.5   DNMT2   tRNA (cytosine(38)-C(5))-methyltransferase 
 sot-r.1   102596409   tRNA (cytosine(38)-C(5))-methyltransferase 
 nta-r.1   107814185   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 nta-r.1   107829352   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 osa-u.5   9268926   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 zma-u.5   542067   DNA methyl transferase 4 
 tae-r.2   123061457   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 tae-r.2   100859954   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 tae-r.2   123070101   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 hvu-r.1   123443860   tRNA (cytosine(38)-C(5))-methyltransferase 2 
 sbi-r.1   8054375   tRNA (cytosine(38)-C(5))-methyltransferase 
 bdi-r.1   100822436   tRNA (cytosine(38)-C(5))-methyltransferase 
 cre-r.1   CHLRE_12g484600v5   uncharacterized protein 

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Top 50 coexpressed genes to DNMT2 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DNMT2 (ath-m.4.tis coexpression data)

CoexMap"832623"


athDNMT2 | Entrez gene ID : 832623      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 1 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (117 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_568474.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_568474.1)
Subcellular
localization
TargetP
other 9  (predict for NP_568474.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
DNMT2
ath-u.5
for
DNMT2
ath-r.7
for
DNMT2
ath-m.9
for
DNMT2
ath-e.2
for
DNMT2
ath-m.4.bio
for
DNMT2
ath-m.4.hor
for
DNMT2
ath-m.4.lig
for
DNMT2
ath-m.4.str
for
DNMT2
bra-r.6
for
103874407
bna-r.1
for
106348535
bna-r.1
for
106407360
ghi-r.1
for
107907768
cit-r.1
for
102609884
gma-u.5
for
100792567
vvi-u.5
for
109121395
ppo-u.5
for
7495763
mtr-u.5
for
11433867
sly-u.5
for
DNMT2
sot-r.1
for
102596409
nta-r.1
for
107814185
nta-r.1
for
107829352
osa-u.5
for
9268926
zma-u.5
for
542067
tae-r.2
for
123061457
tae-r.2
for
100859954
tae-r.2
for
123070101
hvu-r.1
for
123443860
sbi-r.1
for
8054375
bdi-r.1
for
100822436
cre-r.1
for
CHLRE_12g484600v5


Ortholog ID: 10959
Species ath bra bna bna ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol DNMT2 LOC103874407 LOC106348535 LOC106407360 LOC107907768 LOC102609884 LOC100792567 LOC109121395 LOC7495763 LOC11433867 DNMT2 LOC102596409 LOC107814185 LOC107829352 LOC9268926 LOC542067 LOC123061457 LOC100859954 LOC123070101 LOC123443860 LOC8054375 LOC100822436 CHLRE_12g484600v5
Function* DNA methyltransferase-2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2-like tRNA (cytosine(38)-C(5))-methyltransferase 2-like tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine-5-)-methyltransferase-like tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase tRNA (cytosine(38)-C(5))-methyltransferase tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 DNA methyl transferase 4 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase 2 tRNA (cytosine(38)-C(5))-methyltransferase tRNA (cytosine(38)-C(5))-methyltransferase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03013 Nucleocytoplasmic transport 5
sbi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832623 103874407 106348535 106407360 107907768 102609884 100792567 109121395 7495763 11433867 101263628 102596409 107814185 107829352 9268926 542067 123061457 100859954 123070101 123443860 8054375 100822436 5728714
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