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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-u.5   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-r.7   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-m.9   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-e.2   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-m.4.bio   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-m.4.hor   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-m.4.lig   AT5G54090   DNA mismatch repair protein MutS, type 2 
 ath-m.4.str   AT5G54090   DNA mismatch repair protein MutS, type 2 
 bra-r.6   103851994   endonuclease MutS2 
 bna-r.1   106380943   endonuclease MutS2 
 bna-r.1   106390236   endonuclease MutS2-like 
 ghi-r.1   107917901   endonuclease MutS2 
 ghi-r.1   107929573   endonuclease MutS2 
 cit-r.1   102631445   uncharacterized LOC102631445 
 gma-u.5   100791225   endonuclease MutS2 
 vvi-u.5   100241843   uncharacterized LOC100241843 
 ppo-u.5   7493474   uncharacterized LOC7493474 
 mtr-u.5   11405423   endonuclease MutS2 
 sly-u.5   101255670   uncharacterized LOC101255670 
 sot-r.1   102596319   endonuclease MutS2 
 nta-r.1   107776753   uncharacterized LOC107776753 
 nta-r.1   107826629   uncharacterized LOC107826629 
 osa-u.5   4349080   uncharacterized LOC4349080 
 zma-u.5   100382240   uncharacterized LOC100382240 
 tae-r.2   123181310   endonuclease MutS2 
 tae-r.2   123124641   endonuclease MutS2 
 tae-r.2   123048714   endonuclease MutS2 
 hvu-r.1   123434507   endonuclease MutS2 
 sbi-r.1   8065183   endonuclease MutS2 
 bdi-r.1   100829925   endonuclease MutS2 
 cre-r.1   CHLRE_01g040350v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G54090 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G54090 (ath-m.4.tis coexpression data)

CoexMap"835495"


athAT5G54090 | Entrez gene ID : 835495      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045910 [list] [network] negative regulation of DNA recombination  (10 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (12 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_200220.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 4  (predict for NP_200220.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_200220.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
AT5G54090
ath-u.5
for
AT5G54090
ath-r.7
for
AT5G54090
ath-m.9
for
AT5G54090
ath-e.2
for
AT5G54090
ath-m.4.bio
for
AT5G54090
ath-m.4.hor
for
AT5G54090
ath-m.4.lig
for
AT5G54090
ath-m.4.str
for
AT5G54090
bra-r.6
for
103851994
bna-r.1
for
106380943
bna-r.1
for
106390236
ghi-r.1
for
107917901
ghi-r.1
for
107929573
cit-r.1
for
102631445
gma-u.5
for
100791225
vvi-u.5
for
100241843
ppo-u.5
for
7493474
mtr-u.5
for
11405423
sly-u.5
for
101255670
sot-r.1
for
102596319
nta-r.1
for
107776753
nta-r.1
for
107826629
osa-u.5
for
4349080
zma-u.5
for
100382240
tae-r.2
for
123181310
tae-r.2
for
123124641
tae-r.2
for
123048714
hvu-r.1
for
123434507
sbi-r.1
for
8065183
bdi-r.1
for
100829925
cre-r.1
for
CHLRE_01g040350v5


Ortholog ID: 10395
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G54090 LOC103851994 LOC106380943 LOC106390236 LOC107917901 LOC107929573 LOC102631445 LOC100791225 LOC100241843 LOC7493474 LOC11405423 LOC101255670 LOC102596319 LOC107776753 LOC107826629 LOC4349080 LOC100382240 LOC123181310 LOC123124641 LOC123048714 LOC123434507 LOC8065183 LOC100829925 CHLRE_01g040350v5
Function* DNA mismatch repair protein MutS, type 2 endonuclease MutS2 endonuclease MutS2 endonuclease MutS2-like endonuclease MutS2 endonuclease MutS2 uncharacterized LOC102631445 endonuclease MutS2 uncharacterized LOC100241843 uncharacterized LOC7493474 endonuclease MutS2 uncharacterized LOC101255670 endonuclease MutS2 uncharacterized LOC107776753 uncharacterized LOC107826629 uncharacterized LOC4349080 uncharacterized LOC100382240 endonuclease MutS2 endonuclease MutS2 endonuclease MutS2 endonuclease MutS2 endonuclease MutS2 endonuclease MutS2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00790 Folate biosynthesis 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae01230 Biosynthesis of amino acids 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835495 103851994 106380943 106390236 107917901 107929573 102631445 100791225 100241843 7493474 11405423 101255670 102596319 107776753 107826629 4349080 100382240 123181310 123124641 123048714 123434507 8065183 100829925 5715553
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