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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   TRN1   tornado 1 
 ath-u.5   TRN1   tornado 1 
 ath-r.7   TRN1   tornado 1 
 ath-m.9   TRN1   tornado 1 
 ath-e.2   TRN1   tornado 1 
 ath-m.4.bio   TRN1   tornado 1 
 ath-m.4.hor   TRN1   tornado 1 
 ath-m.4.lig   TRN1   tornado 1 
 ath-m.4.str   TRN1   tornado 1 
 bra-r.6   103844989   protein TORNADO 1 
 bna-r.1   106418253   protein TORNADO 1 
 bna-r.1   106371408   protein TORNADO 1-like 
 ghi-r.1   107922004   protein TORNADO 1 
 ghi-r.1   107917826   protein TORNADO 1 
 cit-r.1   102624681   protein TORNADO 1 
 gma-u.5   100784182   protein TORNADO 1 
 gma-u.5   100817598   protein TORNADO 1 
 vvi-u.5   100246876   protein TORNADO 1 
 ppo-u.5   7487528   protein TORNADO 1 
 mtr-u.5   11444833   protein TORNADO 1 
 sly-u.5   TRN1   protein TORNADO 1 
 sot-r.1   102594642   protein TORNADO 1 
 nta-r.1   107818193   protein TORNADO 1-like 
 nta-r.1   107782321   protein TORNADO 1-like 
 osa-u.5   107280430   protein TORNADO 1 
 zma-u.5   113839499   uncharacterized LOC113839499 
 tae-r.2   123105045   protein TORNADO 1 
 tae-r.2   123122854   protein TORNADO 1 
 tae-r.2   123113341   protein TORNADO 1 
 hvu-r.1   123452258   protein TORNADO 1 
 sbi-r.1   8085929   protein TORNADO 1 
 bdi-r.1   100846548   protein TORNADO 1 

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Top 50 coexpressed genes to TRN1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRN1 (ath-m.4.tis coexpression data)

CoexMap"835648"


athTRN1 | Entrez gene ID : 835648      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010540 [list] [network] basipetal auxin transport  (15 genes)  IMP  
GO:0009956 [list] [network] radial pattern formation  (28 genes)  IMP  
GO:0010305 [list] [network] leaf vascular tissue pattern formation  (29 genes)  IMP  
GO:0009825 [list] [network] multidimensional cell growth  (43 genes)  IMP  
GO:0009933 [list] [network] meristem structural organization  (56 genes)  IMP  
GO:0009926 [list] [network] auxin polar transport  (72 genes)  IDA IGI  
GO:0009965 [list] [network] leaf morphogenesis  (103 genes)  IMP  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001330366.1 [sequence] [blastp]
NP_200365.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  chlo 2,  cysk_nucl 1,  cyto 1,  extr 1,  chlo_mito 1  (predict for NP_001330366.1)
nucl 2,  chlo 2,  cysk_nucl 1,  cyto 1,  extr 1,  chlo_mito 1  (predict for NP_200365.1)
Subcellular
localization
TargetP
other 5  (predict for NP_001330366.1)
other 5  (predict for NP_200365.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
TRN1
ath-u.5
for
TRN1
ath-r.7
for
TRN1
ath-m.9
for
TRN1
ath-e.2
for
TRN1
ath-m.4.bio
for
TRN1
ath-m.4.hor
for
TRN1
ath-m.4.lig
for
TRN1
ath-m.4.str
for
TRN1
bra-r.6
for
103844989
bna-r.1
for
106418253
bna-r.1
for
106371408
ghi-r.1
for
107922004
ghi-r.1
for
107917826
cit-r.1
for
102624681
gma-u.5
for
100784182
gma-u.5
for
100817598
vvi-u.5
for
100246876
ppo-u.5
for
7487528
mtr-u.5
for
11444833
sly-u.5
for
TRN1
sot-r.1
for
102594642
nta-r.1
for
107818193
nta-r.1
for
107782321
osa-u.5
for
107280430
zma-u.5
for
113839499
tae-r.2
for
123105045
tae-r.2
for
123122854
tae-r.2
for
123113341
hvu-r.1
for
123452258
sbi-r.1
for
8085929
bdi-r.1
for
100846548


Ortholog ID: 10999
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol TRN1 LOC103844989 LOC106418253 LOC106371408 LOC107922004 LOC107917826 LOC102624681 LOC100784182 LOC100817598 LOC100246876 LOC7487528 LOC11444833 TRN1 LOC102594642 LOC107818193 LOC107782321 LOC107280430 LOC113839499 LOC123105045 LOC123122854 LOC123113341 LOC123452258 LOC8085929 LOC100846548
Function* tornado 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1-like protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1-like protein TORNADO 1-like protein TORNADO 1 uncharacterized LOC113839499 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1 protein TORNADO 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835648 103844989 106418253 106371408 107922004 107917826 102624681 100784182 100817598 100246876 7487528 11444833 101255577 102594642 107818193 107782321 107280430 113839499 123105045 123122854 123113341 123452258 8085929 100846548
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