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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 ath-m.9   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 ath-m.4.bio   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 ath-m.4.hor   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 ath-m.4.lig   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 ath-m.4.str   LINC4   branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 
 bra-r.6   103837593   protein CROWDED NUCLEI 4 
 bna-r.1   106413271   protein CROWDED NUCLEI 4 
 bna-r.1   106348094   protein CROWDED NUCLEI 4 
 bna-r.1   106445935   protein CROWDED NUCLEI 4 
 ghi-r.1   107940026   uncharacterized LOC107940026 
 ghi-r.1   121220331   uncharacterized LOC121220331 
 ghi-r.1   107950522   protein CROWDED NUCLEI 4 
 cit-r.1   102613597   protein CROWDED NUCLEI 4 
 gma-u.5   100804453   protein CROWDED NUCLEI 4 
 gma-u.5   100783880   protein CROWDED NUCLEI 4 
 vvi-u.5   100245758   protein CROWDED NUCLEI 4 
 ppo-u.5   7485207   protein CROWDED NUCLEI 4 
 mtr-u.5   25493541   protein CROWDED NUCLEI 4 
 sly-u.5   101246104   protein CROWDED NUCLEI 4 
 sot-r.1   102582491   protein CROWDED NUCLEI 4 
 nta-r.1   107815585   uncharacterized LOC107815585 
 nta-r.1   107796185   uncharacterized LOC107796185 
 osa-u.5   4325497   protein CROWDED NUCLEI 4 
 zma-u.5   100216960   uncharacterized LOC100216960 
 tae-r.2   123079284   nuclear matrix constituent protein 1b 
 tae-r.2   123070898   nuclear matrix constituent protein 1b 
 tae-r.2   123062169   nuclear matrix constituent protein 1b 
 hvu-r.1   123444504   nuclear matrix constituent protein 1b-like 
 sbi-r.1   110434066   protein CROWDED NUCLEI 4-like 
 bdi-r.1   100834403   protein CROWDED NUCLEI 4 

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Top 50 coexpressed genes to LINC4 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LINC4 (ath-m.4.tis coexpression data)

CoexMap"836706"


athLINC4 | Entrez gene ID : 836706      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 1 3 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0097298 [list] [network] regulation of nucleus size  (4 genes)  IMP  
GO:0006997 [list] [network] nucleus organization  (51 genes)  IMP  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IGI  
GO CC
GO:0005652 [list] [network] nuclear lamina  (2 genes)  IDA  
GO:0034399 [list] [network] nuclear periphery  (8 genes)  IDA  
GO:0010369 [list] [network] chromocenter  (12 genes)  IMP  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154799.1 [sequence] [blastp]
NP_001190626.1 [sequence] [blastp]
NP_001190627.1 [sequence] [blastp]
NP_201378.5 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_001154799.1)
chlo 7,  nucl 2  (predict for NP_001190626.1)
chlo 7,  nucl 2  (predict for NP_001190627.1)
chlo 7,  nucl 2  (predict for NP_201378.5)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001154799.1)
chlo 5  (predict for NP_001190626.1)
chlo 5  (predict for NP_001190627.1)
chlo 5  (predict for NP_201378.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
LINC4
ath-m.9
for
LINC4
ath-m.4.bio
for
LINC4
ath-m.4.hor
for
LINC4
ath-m.4.lig
for
LINC4
ath-m.4.str
for
LINC4
bra-r.6
for
103837593
bna-r.1
for
106413271
bna-r.1
for
106348094
bna-r.1
for
106445935
ghi-r.1
for
107940026
ghi-r.1
for
121220331
ghi-r.1
for
107950522
cit-r.1
for
102613597
gma-u.5
for
100804453
gma-u.5
for
100783880
vvi-u.5
for
100245758
ppo-u.5
for
7485207
mtr-u.5
for
25493541
sly-u.5
for
101246104
sot-r.1
for
102582491
nta-r.1
for
107815585
nta-r.1
for
107796185
osa-u.5
for
4325497
zma-u.5
for
100216960
tae-r.2
for
123079284
tae-r.2
for
123070898
tae-r.2
for
123062169
hvu-r.1
for
123444504
sbi-r.1
for
110434066
bdi-r.1
for
100834403


Ortholog ID: 7012
Species bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103837593 LOC106413271 LOC106348094 LOC106445935 LOC107898996 LOC107900166 LOC107935256 LOC102613597 LOC100804453 LOC100783880 LOC100245758 LOC7485207 LOC25493541 LOC101246104 LOC102582491 LOC107815585 LOC107796185 LOC4325497 LOC100216960 LOC123079284 LOC123070898 LOC123062169 LOC123444504 LOC110434066 LOC100834403
Function* protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 uncharacterized LOC107900166 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 protein CROWDED NUCLEI 4 uncharacterized LOC107815585 uncharacterized LOC107796185 protein CROWDED NUCLEI 4 uncharacterized LOC100216960 nuclear matrix constituent protein 1b nuclear matrix constituent protein 1b nuclear matrix constituent protein 1b nuclear matrix constituent protein 1b-like protein CROWDED NUCLEI 4-like protein CROWDED NUCLEI 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103837593 106413271 106348094 106445935 107898996 107900166 107935256 102613597 100804453 100783880 100245758 7485207 25493541 101246104 102582491 107815585 107796185 4325497 100216960 123079284 123070898 123062169 123444504 110434066 100834403
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