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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   RP1   ribosomal protein 1 
 ath-u.5   RP1   ribosomal protein 1 
 ath-r.7   RP1   ribosomal protein 1 
 ath-m.9   RP1   ribosomal protein 1 
 ath-e.2   RP1   ribosomal protein 1 
 ath-m.4.bio   RP1   ribosomal protein 1 
 ath-m.4.hor   RP1   ribosomal protein 1 
 ath-m.4.lig   RP1   ribosomal protein 1 
 ath-m.4.str   RP1   ribosomal protein 1 
 ath-u.5   RPL3B   R-protein L3 B 
 bra-r.6   103848547   60S ribosomal protein L3-1 
 bra-r.6   103849653   60S ribosomal protein L3-2 
 bna-r.1   125577875   60S ribosomal protein L3-1-like 
 bna-r.1   106371594   60S ribosomal protein L3-1 
 bna-r.1   106432417   60S ribosomal protein L3-1 
 ghi-r.1   107898684   60S ribosomal protein L3-2 
 ghi-r.1   107904925   60S ribosomal protein L3 
 ghi-r.1   107910462   60S ribosomal protein L3 
 cit-r.1   102619970   60S ribosomal protein L3 
 cit-r.1   102611748   60S ribosomal protein L3-2 
 gma-u.5   100792174   60S ribosomal protein L3 
 gma-u.5   100819132   60S ribosomal protein L3 
 gma-u.5   100782902   60S ribosomal protein L3 
 vvi-u.5   100267716   large ribosomal subunit protein uL3y 
 vvi-u.5   100260533   large ribosomal subunit protein uL3 
 ppo-u.5   7492475   60S ribosomal protein L3 
 ppo-u.5   7468770   60S ribosomal protein L3 
 ppo-u.5   112326952   60S ribosomal protein L3-2 
 mtr-u.5   11428007   60S ribosomal protein L3-1 
 mtr-u.5   25493328   60S ribosomal protein L3 
 sly-u.5   101266871   large ribosomal subunit protein uL3y 
 sly-u.5   RPL3   ribosomal protein L3 
 sot-r.1   102590107   60S ribosomal protein L3-2 
 sot-r.1   102598069   60S ribosomal protein L3-like 
 nta-r.1   107767586   large ribosomal subunit protein uL3y 
 nta-r.1   107799324   large ribosomal subunit protein uL3 
 nta-r.1   107788247   large ribosomal subunit protein uL3 
 osa-u.5   4351604   60S ribosomal protein L3-like 
 osa-u.5   4349878   60S ribosomal protein L3-like 
 zma-u.5   103646454   60S ribosomal protein L3 
 zma-u.5   101027258   60S ribosomal protein L3 
 zma-u.5   103647029   60S ribosomal protein L3 
 tae-r.2   123091434   60S ribosomal protein L3 
 tae-r.2   123102827   60S ribosomal protein L3 
 tae-r.2   543049   60S ribosomal protein L3 
 hvu-r.1   123447985   60S ribosomal protein L3-like 
 hvu-r.1   123399600   60S ribosomal protein L3 
 sbi-r.1   8066789   60S ribosomal protein L3 
 sbi-r.1   8073619   60S ribosomal protein L3 
 bdi-r.1   100843702   60S ribosomal protein L3 
 cre-r.1   CHLRE_10g417700v5   ribosomal protein L3 

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Top 50 coexpressed genes to RP1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RP1 (ath-m.4.tis coexpression data)

CoexMap"840916"


athRP1 | Entrez gene ID : 840916      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 3 2 3 2 2 2 3 2 3 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA TAS  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0009505 [list] [network] plant-type cell wall  (504 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001031146.1 [sequence] [blastp]
NP_001077671.1 [sequence] [blastp]
NP_001185148.1 [sequence] [blastp]
NP_001185149.1 [sequence] [blastp]
NP_001185150.1 [sequence] [blastp]
NP_001185151.1 [sequence] [blastp]
NP_001185152.1 [sequence] [blastp]
NP_175009.1 [sequence] [blastp]
NP_973966.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001031146.1)
cyto 8,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for NP_001077671.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001185148.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001185149.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001185150.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001185151.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001185152.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_175009.1)
chlo 4,  cyto 3,  E.R. 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_973966.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_001031146.1)
mito 7,  other 3  (predict for NP_001077671.1)
other 4,  mito 3  (predict for NP_001185148.1)
other 4,  mito 3  (predict for NP_001185149.1)
other 4,  mito 3  (predict for NP_001185150.1)
other 4,  mito 3  (predict for NP_001185151.1)
other 4,  mito 3  (predict for NP_001185152.1)
other 4,  mito 3  (predict for NP_175009.1)
other 4,  mito 3  (predict for NP_973966.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
RP1
ath-u.5
for
RP1
ath-r.7
for
RP1
ath-m.9
for
RP1
ath-e.2
for
RP1
ath-m.4.bio
for
RP1
ath-m.4.hor
for
RP1
ath-m.4.lig
for
RP1
ath-m.4.str
for
RP1
ath-u.5
for
RPL3B
bra-r.6
for
103848547
bra-r.6
for
103849653
bna-r.1
for
125577875
bna-r.1
for
106371594
bna-r.1
for
106432417
ghi-r.1
for
107898684
ghi-r.1
for
107904925
ghi-r.1
for
107910462
cit-r.1
for
102619970
cit-r.1
for
102611748
gma-u.5
for
100792174
gma-u.5
for
100819132
gma-u.5
for
100782902
vvi-u.5
for
100267716
vvi-u.5
for
100260533
ppo-u.5
for
7492475
ppo-u.5
for
7468770
ppo-u.5
for
112326952
mtr-u.5
for
11428007
mtr-u.5
for
25493328
sly-u.5
for
101266871
sly-u.5
for
RPL3
sot-r.1
for
102590107
sot-r.1
for
102598069
nta-r.1
for
107767586
nta-r.1
for
107799324
nta-r.1
for
107788247
osa-u.5
for
4351604
osa-u.5
for
4349878
zma-u.5
for
103646454
zma-u.5
for
101027258
zma-u.5
for
103647029
tae-r.2
for
123091434
tae-r.2
for
123102827
tae-r.2
for
543049
hvu-r.1
for
123447985
hvu-r.1
for
123399600
sbi-r.1
for
8066789
sbi-r.1
for
8073619
bdi-r.1
for
100843702
cre-r.1
for
CHLRE_10g417700v5


Ortholog ID: 2184
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol RP1 RPL3B LOC103848547 LOC103849653 LOC103838748 LOC106371594 LOC106410501 LOC106453281 LOC107898684 LOC107910462 LOC107943200 LOC102619970 LOC102611748 LOC100792174 LOC100819132 LOC100782902 LOC100267716 LOC100260533 LOC7492475 LOC7468770 LOC112326952 LOC11428007 LOC25493328 LOC101266871 RPL3 LOC102590107 LOC102598069 LOC107767586 LOC107799324 LOC107768851 LOC4351604 LOC4349878 LOC103647029 LOC103647030 LOC100192516 LOC123102827 LOC543049 LOC123096408 LOC123447985 LOC123399600 LOC8066789 LOC8073619 LOC100843702 CHLRE_10g417700v5
Function* ribosomal protein 1 R-protein L3 B 60S ribosomal protein L3-1 60S ribosomal protein L3-2 60S ribosomal protein L3-1 60S ribosomal protein L3-1 60S ribosomal protein L3-1 60S ribosomal protein L3-2-like 60S ribosomal protein L3-2 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3-2 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3 large ribosomal subunit protein uL3y large ribosomal subunit protein uL3 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3-2 60S ribosomal protein L3-1 60S ribosomal protein L3 large ribosomal subunit protein uL3y ribosomal protein L3 60S ribosomal protein L3-2 60S ribosomal protein L3-like large ribosomal subunit protein uL3y large ribosomal subunit protein uL3 60S ribosomal protein L3-like 60S ribosomal protein L3-like 60S ribosomal protein L3-like 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3-1 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3-like 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3 60S ribosomal protein L3 ribosomal protein L3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03020 RNA polymerase 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00061 Fatty acid biosynthesis 6
ghi01212 Fatty acid metabolism 6
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 2
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 8
ppo03010 Ribosome 8
ppo00510 N-Glycan biosynthesis 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
tae00240 Pyrimidine metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
cre03013 Nucleocytoplasmic transport 2
cre00220 Arginine biosynthesis 2
cre00250 Alanine, aspartate and glutamate metabolism 2
cre00630 Glyoxylate and dicarboxylate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840916 842454 103848547 103849653 103838748 106371594 106410501 106453281 107898684 107910462 107943200 102619970 102611748 100792174 100819132 100782902 100267716 100260533 7492475 7468770 112326952 11428007 25493328 101266871 778284 102590107 102598069 107767586 107799324 107768851 4351604 4349878 103647029 103647030 100192516 123102827 543049 123096408 123447985 123399600 8066789 8073619 100843702 5728341
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