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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   PME1   pectin methylesterase 1 
 ath-u.5   PME1   pectin methylesterase 1 
 ath-r.7   PME1   pectin methylesterase 1 
 ath-m.9   PME1   pectin methylesterase 1 
 ath-e.2   PME1   pectin methylesterase 1 
 ath-m.4.bio   PME1   pectin methylesterase 1 
 ath-m.4.hor   PME1   pectin methylesterase 1 
 ath-m.4.lig   PME1   pectin methylesterase 1 
 ath-m.4.str   PME1   pectin methylesterase 1 
 bra-r.6   103871107   pectinesterase 1 
 bra-r.6   103848507   pectinesterase 1 
 bna-r.1   125597393   pectinesterase 1-like 
 bna-r.1   125601677   pectinesterase 1-like 
 bna-r.1   106418361   pectinesterase 1 
 ghi-r.1   107958344   pectinesterase 3 
 ghi-r.1   107940583   pectinesterase 3 
 ghi-r.1   107906032   pectinesterase 3 
 cit-r.1   102620200   pectinesterase 3 
 gma-u.5   100784642   pectinesterase 3 
 gma-u.5   100777128   pectinesterase 3-like 
 vvi-u.5   100232847   pectinesterase 3 
 ppo-u.5   7471605   pectinesterase 3 
 mtr-u.5   11445925   pectinesterase 3 
 sly-u.5   101245743   pectinesterase 3 
 sot-r.1   102588428   pectinesterase 3 
 nta-r.1   107788952   pectinesterase 3 
 nta-r.1   107771445   pectinesterase 1-like 

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Top 50 coexpressed genes to PME1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PME1 (ath-m.4.tis coexpression data)

CoexMap""


athPME1 | Entrez gene ID : 841821      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae cre bdi hvu sbi zma
Paralog 9 2 3 3 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pectin methylesterase 1
KEGG
GO BP
GO:0042545 [list] [network] cell wall modification  (164 genes)  IEA  
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO CC
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  HDA  
GO:0005768 [list] [network] endosome  (359 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA ISM  
GO MF
GO:0051723 [list] [network] protein methylesterase activity  (2 genes)  IDA  
GO:0030599 [list] [network] pectinesterase activity  (17 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_175787.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  E.R. 2,  nucl_plas 2,  cyto_E.R. 2  (predict for NP_175787.1)
Subcellular
localization
TargetP
other 9  (predict for NP_175787.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
PME1
ath-u.5
for
PME1
ath-r.7
for
PME1
ath-m.9
for
PME1
ath-e.2
for
PME1
ath-m.4.bio
for
PME1
ath-m.4.hor
for
PME1
ath-m.4.lig
for
PME1
ath-m.4.str
for
PME1
bra-r.6
for
103871107
bra-r.6
for
103848507
bna-r.1
for
125597393
bna-r.1
for
125601677
bna-r.1
for
106418361
ghi-r.1
for
107958344
ghi-r.1
for
107940583
ghi-r.1
for
107906032
cit-r.1
for
102620200
gma-u.5
for
100784642
gma-u.5
for
100777128
vvi-u.5
for
100232847
ppo-u.5
for
7471605
mtr-u.5
for
11445925
sly-u.5
for
101245743
sot-r.1
for
102588428
nta-r.1
for
107788952
nta-r.1
for
107771445

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Ortholog ID: 11298
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta
Symbol PME1 LOC103871107 LOC103848507 LOC125601677 LOC106418361 LOC106345802 LOC107958344 LOC107940583 LOC107897672 LOC102620200 LOC100784642 LOC100777128 LOC100232847 LOC7471605 LOC11445925 LOC101245743 LOC102588428 LOC107788952 LOC107771445
Function* pectin methylesterase 1 pectinesterase 1 pectinesterase 1 pectinesterase 1-like pectinesterase 1 pectinesterase 1 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3-like pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 3 pectinesterase 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 4
mtr01250 Biosynthesis of nucleotide sugars 3
mtr00051 Fructose and mannose metabolism 2
mtr00541 Biosynthesis of various nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841821 103871107 103848507 125601677 106418361 106345802 107958344 107940583 107897672 102620200 100784642 100777128 100232847 7471605 11445925 101245743 102588428 107788952 107771445
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