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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   LDL1   LSD1-like 1 
 ath-u.5   LDL1   LSD1-like 1 
 ath-r.7   LDL1   LSD1-like 1 
 ath-m.9   LDL1   LSD1-like 1 
 ath-e.2   LDL1   LSD1-like 1 
 ath-m.4.bio   LDL1   LSD1-like 1 
 ath-m.4.hor   LDL1   LSD1-like 1 
 ath-m.4.lig   LDL1   LSD1-like 1 
 ath-m.4.str   LDL1   LSD1-like 1 
 bra-r.6   103838362   lysine-specific histone demethylase 1 homolog 1 
 bna-r.1   106366542   lysine-specific histone demethylase 1 homolog 1-like 
 bna-r.1   106401023   lysine-specific histone demethylase 1 homolog 1 
 ghi-r.1   121217772   lysine-specific histone demethylase 1 homolog 1 
 ghi-r.1   107905660   lysine-specific histone demethylase 1 homolog 1 
 cit-r.1   102630935   lysine-specific histone demethylase 1 homolog 1 
 gma-u.5   106794445   lysine-specific histone demethylase 1 homolog 1 
 gma-u.5   102659364   lysine-specific histone demethylase 1 homolog 1 
 vvi-u.5   100245322   lysine-specific histone demethylase 1 homolog 1 
 ppo-u.5   7496880   lysine-specific histone demethylase 1 homolog 1 
 mtr-u.5   25496860   lysine-specific histone demethylase 1 homolog 1 
 sly-u.5   104649682   lysine-specific histone demethylase 1 homolog 1 
 sot-r.1   102604901   lysine-specific histone demethylase 1 homolog 1 
 nta-r.1   107805349   lysine-specific histone demethylase 1 homolog 1-like 
 osa-u.5   4330771   lysine-specific histone demethylase 1 homolog 1-like 
 zma-u.5   103627761   lysine-specific histone demethylase 1 homolog 1 
 tae-r.2   123145588   lysine-specific histone demethylase 1 homolog 1 
 tae-r.2   123138344   lysine-specific histone demethylase 1 homolog 1 
 tae-r.2   123128465   lysine-specific histone demethylase 1 homolog 1-like 
 hvu-r.1   123402859   lysine-specific histone demethylase 1 homolog 1 
 sbi-r.1   8075687   lysine-specific histone demethylase 1 homolog 1 
 bdi-r.1   100821112   lysine-specific histone demethylase 1 homolog 1 

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Top 50 coexpressed genes to LDL1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LDL1 (ath-m.4.tis coexpression data)

CoexMap"842582"


athLDL1 | Entrez gene ID : 842582      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 1 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IDA  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0042800 [list] [network] histone H3K4 methyltransferase activity  (9 genes)  IMP  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176471.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_176471.1)
Subcellular
localization
TargetP
other 9  (predict for NP_176471.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
LDL1
ath-u.5
for
LDL1
ath-r.7
for
LDL1
ath-m.9
for
LDL1
ath-e.2
for
LDL1
ath-m.4.bio
for
LDL1
ath-m.4.hor
for
LDL1
ath-m.4.lig
for
LDL1
ath-m.4.str
for
LDL1
bra-r.6
for
103838362
bna-r.1
for
106366542
bna-r.1
for
106401023
ghi-r.1
for
121217772
ghi-r.1
for
107905660
cit-r.1
for
102630935
gma-u.5
for
106794445
gma-u.5
for
102659364
vvi-u.5
for
100245322
ppo-u.5
for
7496880
mtr-u.5
for
25496860
sly-u.5
for
104649682
sot-r.1
for
102604901
nta-r.1
for
107805349
osa-u.5
for
4330771
zma-u.5
for
103627761
tae-r.2
for
123145588
tae-r.2
for
123138344
tae-r.2
for
123128465
hvu-r.1
for
123402859
sbi-r.1
for
8075687
bdi-r.1
for
100821112


Ortholog ID: 11103
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae tae tae hvu sbi bdi
Symbol LDL1 LOC103838362 LOC106366542 LOC106401023 LOC121217772 LOC107905660 LOC102630935 LOC106794445 LOC102659364 LOC100245322 LOC7496880 LOC25496860 LOC104649682 LOC102604901 LOC107805349 LOC4330771 LOC103627761 LOC123145588 LOC123138344 LOC123128465 LOC123402859 LOC8075687 LOC100821112
Function* LSD1-like 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1-like lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1-like lysine-specific histone demethylase 1 homolog 1-like lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1-like lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1 lysine-specific histone demethylase 1 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03013 Nucleocytoplasmic transport 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu00061 Fatty acid biosynthesis 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842582 103838362 106366542 106401023 121217772 107905660 102630935 106794445 102659364 100245322 7496880 25496860 104649682 102604901 107805349 4330771 103627761 123145588 123138344 123128465 123402859 8075687 100821112
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