ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-u.5	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-r.7	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-m.9	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-e.2	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-m.4.bio	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-m.4.hor	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-m.4.lig	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-m.4.str	AT1G78550	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-u.5	AT4G25300	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-u.5	AT1G17010	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
bra-r.6	103863102	protein SRG1-like
bra-r.6	103842818	protein SRG1-like
bra-r.6	103861543	protein SRG1
bna-r.1	106361328	protein SRG1
bna-r.1	106375266	protein SRG1-like
ghi-r.1	107928116	protein SRG1
ghi-r.1	107928051	protein SRG1
ghi-r.1	107924998	protein SRG1
cit-r.1	102615722	protein SRG1-like
cit-r.1	102623070	protein SRG1-like
gma-u.5	100781946	codeine O-demethylase
gma-u.5	100777788	protein SRG1
vvi-u.5	100266726	protein SRG1
ppo-u.5	7459137	protein SRG1
ppo-u.5	7459139	protein SRG1
ppo-u.5	7478699	protein SRG1
mtr-u.5	120577598	codeine O-demethylase
mtr-u.5	120577599	protein SRG1
mtr-u.5	120577628	protein SRG1
sly-u.5	101260598	protein SRG1-like
sot-r.1	102584428	protein SRG1-like
sot-r.1	102600514	probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
sot-r.1	102600841	probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
nta-r.1	107766747	oxoglutarate-dependent flavonoid 7-O-demethylase 1
nta-r.1	107761791	protein SRG1-like
osa-u.5	4349365	2-oxoglutarate-dependent dioxygenase 11-like
osa-u.5	4349363	2-oxoglutarate-dependent dioxygenase 11-like
zma-u.5	103625710	S-norcoclaurine synthase 1
zma-u.5	100501344	Protein SRG1
zma-u.5	100282672	naringenin,2-oxoglutarate 3-dioxygenase
tae-r.2	123106104	2-oxoglutarate-dependent dioxygenase 11
tae-r.2	123099141	2-oxoglutarate-dependent dioxygenase 11
hvu-r.1	123439659	2-oxoglutarate-dependent dioxygenase 11-like
hvu-r.1	123440632	S-norcoclaurine synthase 1-like
sbi-r.1	8082623	S-norcoclaurine synthase 1
sbi-r.1	8082622	S-norcoclaurine synthase 1
bdi-r.1	100845845	S-norcoclaurine synthase 1
bdi-r.1	100845211	S-norcoclaurine synthase 1

Top 50 coexpressed genes to AT1G78550 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G78550 (ath-m.4.tis coexpression data)

CoexMap"844191"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_001321984.1 [sequence] [blastp]
NP_177976.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, cysk 1	(predict for NP_001321984.1)
nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3	(predict for NP_177976.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001321984.1)
other 7	(predict for NP_177976.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT1G78550	ath-u.5 for AT1G78550	ath-r.7 for AT1G78550	ath-m.9 for AT1G78550	ath-e.2 for AT1G78550	ath-m.4.bio for AT1G78550	ath-m.4.hor for AT1G78550	ath-m.4.lig for AT1G78550	ath-m.4.str for AT1G78550	ath-u.5 for AT4G25300	ath-u.5 for AT1G17010	bra-r.6 for 103863102	bra-r.6 for 103842818	bra-r.6 for 103861543	bna-r.1 for 106361328	bna-r.1 for 106375266	ghi-r.1 for 107928116	ghi-r.1 for 107928051	ghi-r.1 for 107924998	cit-r.1 for 102615722	cit-r.1 for 102623070	gma-u.5 for 100781946	gma-u.5 for 100777788	vvi-u.5 for 100266726	ppo-u.5 for 7459137	ppo-u.5 for 7459139	ppo-u.5 for 7478699	mtr-u.5 for 120577598	mtr-u.5 for 120577599	mtr-u.5 for 120577628	sly-u.5 for 101260598	sot-r.1 for 102584428	sot-r.1 for 102600514	sot-r.1 for 102600841	nta-r.1 for 107766747	nta-r.1 for 107761791	osa-u.5 for 4349365	osa-u.5 for 4349363	zma-u.5 for 103625710	zma-u.5 for 100501344	zma-u.5 for 100282672	tae-r.2 for 123106104	tae-r.2 for 123099141	hvu-r.1 for 123439659	hvu-r.1 for 123440632	sbi-r.1 for 8082623	sbi-r.1 for 8082622	bdi-r.1 for 100845845	bdi-r.1 for 100845211

Ortholog

Ortholog ID: 162

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SRG1

Function^*

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

senescence-related gene 1

protein SRG1-like

protein SRG1

protein SRG1-like

protein SRG1

codeine O-demethylase

protein SRG1-like

protein SRG1

S-norcoclaurine synthase 1

protein SRG1

codeine O-demethylase

protein SRG1

probable 2-oxoglutarate/Fe(II)-dependent dioxygenase

protein SRG1-like

oxoglutarate-dependent flavonoid 7-O-demethylase 1

protein SRG1

2-oxoglutarate-dependent dioxygenase 11-like

protein SRG1

S-norcoclaurine synthase 1

Protein SRG1

naringenin,2-oxoglutarate 3-dioxygenase

2-oxoglutarate-dependent dioxygenase 11

2-oxoglutarate-dependent dioxygenase 11-like

S-norcoclaurine synthase 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	3
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00910	Nitrogen metabolism	2
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	7
bna00071	Fatty acid degradation	4
bna00280	Valine, leucine and isoleucine degradation	4
bna00380	Tryptophan metabolism	4
bna00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	6
cit00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00900	Terpenoid backbone biosynthesis	2
cit00380	Tryptophan metabolism	2
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	2
gma00561	Glycerolipid metabolism	2
gma00410	beta-Alanine metabolism	2
gma00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	4
vvi00710	Carbon fixation by Calvin cycle	4
vvi01200	Carbon metabolism	4
vvi00020	Citrate cycle (TCA cycle)	3
vvi00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo00410	beta-Alanine metabolism	2
ppo00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	3
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3
mtr00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
sly01230	Biosynthesis of amino acids	5
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	6
nta00500	Starch and sucrose metabolism	6
nta00999	Biosynthesis of various plant secondary metabolites	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00600	Sphingolipid metabolism	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00941	Flavonoid biosynthesis	4
sbi04712	Circadian rhythm - plant	3

Expression

Expression pattern

Entrez Gene ID^*

844191

838271

838272

103842818

117125651

103832334

106354695

106434908

107924998

121222440

102630196

102616390

100775942

100810764

100802304

100267786

100247046

7459137

7459139

7488146

120577598

120577599

120577597

101260598

101258026

102584100

102581777

107810054

107777314

107831059

112935986

4326482

4326481

103625710

100501344

100282672

123099137

123099140

123099139

123439659

123449986

8081558

8057114

8078169

100845845

100845211

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	3	2	2	1	3	3	1	3	2	2	3	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G78550 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT1G78550 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**