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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   TPS1   trehalose-6-phosphate synthase 
 ath-u.5   TPS1   trehalose-6-phosphate synthase 
 ath-r.7   TPS1   trehalose-6-phosphate synthase 
 ath-m.9   TPS1   trehalose-6-phosphate synthase 
 ath-e.2   TPS1   trehalose-6-phosphate synthase 
 ath-m.4.bio   TPS1   trehalose-6-phosphate synthase 
 ath-m.4.hor   TPS1   trehalose-6-phosphate synthase 
 ath-m.4.lig   TPS1   trehalose-6-phosphate synthase 
 ath-m.4.str   TPS1   trehalose-6-phosphate synthase 
 bra-r.6   103832336   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bra-r.6   103853134   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bna-r.1   106397904   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 ghi-r.1   107891731   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ghi-r.1   107891734   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ghi-r.1   107904029   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cit-r.1   102619985   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cit-r.1   102616341   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 gma-u.5   100797533   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 gma-u.5   100797320   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 vvi-u.5   100265802   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 vvi-u.5   100255459   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ppo-u.5   7454402   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ppo-u.5   18095412   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 mtr-u.5   25479856   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 mtr-u.5   25487194   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 sly-u.5   100134910   trehalose-phosphate synthase 1 
 sly-u.5   101255062   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sot-r.1   102578346   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sot-r.1   102588468   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 nta-r.1   107810646   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 nta-r.1   107787237   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 nta-r.1   107793944   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 osa-u.5   9266089   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 zma-u.5   100170239   trehalose-6-phosphate synthase 
 zma-u.5   100381759   uncharacterized LOC100381759 
 tae-r.2   100270668   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 tae-r.2   123063345   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 tae-r.2   123140281   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 hvu-r.1   123447061   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 hvu-r.1   123407826   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sbi-r.1   8082983   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bdi-r.1   100828278   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cre-r.1   CHLRE_16g686200v5   uncharacterized protein 

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Top 50 coexpressed genes to TPS1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TPS1 (ath-m.4.tis coexpression data)

CoexMap"844194"


athTPS1 | Entrez gene ID : 844194      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 1 3 2 2 2 2 2 2 2 3 1 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00500 [list] [network] Starch and sucrose metabolism (172 genes)
GO BP
GO:0005991 [list] [network] trehalose metabolic process  (10 genes)  TAS  
GO:0080186 [list] [network] developmental vegetative growth  (11 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (20 genes)  IMP  
GO:0010182 [list] [network] sugar mediated signaling pathway  (40 genes)  IMP  
GO:0009832 [list] [network] plant-type cell wall biogenesis  (138 genes)  IMP  
GO:0051301 [list] [network] cell division  (192 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0003825 [list] [network] alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity  (11 genes)  IGI  
GO:0016757 [list] [network] glycosyltransferase activity  (554 genes)  ISS  
Protein NP_001319403.1 [sequence] [blastp]
NP_001322931.1 [sequence] [blastp]
NP_001322932.1 [sequence] [blastp]
NP_177979.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  mito 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001319403.1)
chlo 4,  nucl 2,  mito 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001322931.1)
chlo 4,  nucl 2,  mito 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001322932.1)
chlo 4,  nucl 2,  mito 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_177979.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for NP_001319403.1)
chlo 7,  other 3  (predict for NP_001322931.1)
chlo 7,  other 3  (predict for NP_001322932.1)
chlo 7,  other 3  (predict for NP_177979.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
TPS1
ath-u.5
for
TPS1
ath-r.7
for
TPS1
ath-m.9
for
TPS1
ath-e.2
for
TPS1
ath-m.4.bio
for
TPS1
ath-m.4.hor
for
TPS1
ath-m.4.lig
for
TPS1
ath-m.4.str
for
TPS1
bra-r.6
for
103832336
bra-r.6
for
103853134
bna-r.1
for
106397904
ghi-r.1
for
107891731
ghi-r.1
for
107891734
ghi-r.1
for
107904029
cit-r.1
for
102619985
cit-r.1
for
102616341
gma-u.5
for
100797533
gma-u.5
for
100797320
vvi-u.5
for
100265802
vvi-u.5
for
100255459
ppo-u.5
for
7454402
ppo-u.5
for
18095412
mtr-u.5
for
25479856
mtr-u.5
for
25487194
sly-u.5
for
100134910
sly-u.5
for
101255062
sot-r.1
for
102578346
sot-r.1
for
102588468
nta-r.1
for
107810646
nta-r.1
for
107787237
nta-r.1
for
107793944
osa-u.5
for
9266089
zma-u.5
for
100170239
zma-u.5
for
100381759
tae-r.2
for
100270668
tae-r.2
for
123063345
tae-r.2
for
123140281
hvu-r.1
for
123447061
hvu-r.1
for
123407826
sbi-r.1
for
8082983
bdi-r.1
for
100828278
cre-r.1
for
CHLRE_16g686200v5


Ortholog ID: 2355
Species bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC103832336 LOC103853134 LOC106354550 LOC106354691 LOC106365560 LOC107891731 LOC107891734 LOC107904029 LOC102619985 LOC102616341 LOC100789554 LOC100820010 LOC100265802 LOC100255459 LOC7454402 LOC18095412 LOC25479856 LOC25487194 LOC100134910 LOC101255062 LOC102578346 LOC102588468 LOC107810646 LOC107793944 LOC107809478 LOC9266089 LOC100170239 LOC100381759 LOC100270668 LOC123063345 LOC123180210 LOC123447061 LOC123407826 LOC8082983 LOC100828278 CHLRE_16g686200v5
Function* alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 trehalose-phosphate synthase 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 trehalose-6-phosphate synthase uncharacterized LOC100381759 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00966 Glucosinolate biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 5
ghi02010 ABC transporters 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 5
ghi02010 ABC transporters 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 7
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 6
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta00500 Starch and sucrose metabolism 6
nta00220 Arginine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00052 Galactose metabolism 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 6
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta00500 Starch and sucrose metabolism 6
nta00220 Arginine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 6
zma01230 Biosynthesis of amino acids 5
zma00710 Carbon fixation by Calvin cycle 5
zma00030 Pentose phosphate pathway 3
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 9
zma00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00020 Citrate cycle (TCA cycle) 6
hvu01210 2-Oxocarboxylic acid metabolism 5
hvu00785 Lipoic acid metabolism 3
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 3
sbi00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103832336 103853134 106354550 106354691 106365560 107891731 107891734 107904029 102619985 102616341 100789554 100820010 100265802 100255459 7454402 18095412 25479856 25487194 100134910 101255062 102578346 102588468 107810646 107793944 107809478 9266089 100170239 100381759 100270668 123063345 123180210 123447061 123407826 8082983 100828278 5717648
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