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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   P5CS1   delta1-pyrroline-5-carboxylate synthase 1 
 ath-u.5   P5CS1   delta1-pyrroline-5-carboxylate synthase 1 
 ath-e.2   P5CS1   delta1-pyrroline-5-carboxylate synthase 1 
 ath-u.5   P5CS2   delta 1-pyrroline-5-carboxylate synthase 2 
 bra-r.6   103867010   delta-1-pyrroline-5-carboxylate synthase A 
 bra-r.6   103865746   delta-1-pyrroline-5-carboxylate synthase A 
 bna-r.1   106445364   delta-1-pyrroline-5-carboxylate synthase B 
 bna-r.1   106391557   delta-1-pyrroline-5-carboxylate synthase A 
 bna-r.1   106395965   delta-1-pyrroline-5-carboxylate synthase A 
 ghi-r.1   107899340   delta-1-pyrroline-5-carboxylate synthase 
 ghi-r.1   107935332   delta-1-pyrroline-5-carboxylate synthase 
 ghi-r.1   107940896   delta-1-pyrroline-5-carboxylate synthase 
 cit-r.1   102619471   delta-1-pyrroline-5-carboxylate synthase-like 
 cit-r.1   102609124   delta-1-pyrroline-5-carboxylate synthase 
 gma-u.5   ALDH18B1   delta-1-pyrroline-5-carboxylate synthase 
 gma-u.5   ALDH18B4   delta-1-pyrroline-5-carboxylate synthase 
 gma-u.5   ALDH18B2   delta-1-pyrroline-5-carboxylate synthase 
 vvi-u.5   P5CS   pyrroline-5-carboxylate synthetase 
 ppo-u.5   7490371   delta-1-pyrroline-5-carboxylate synthase 
 ppo-u.5   18101402   delta-1-pyrroline-5-carboxylate synthase 
 mtr-u.5   25491556   delta-1-pyrroline-5-carboxylate synthase 
 mtr-u.5   25498588   delta-1-pyrroline-5-carboxylate synthase 
 mtr-u.5   11410328   delta-1-pyrroline-5-carboxylate synthase 
 sly-u.5   101244293   delta-1-pyrroline-5-carboxylate synthase-like 
 sly-u.5   PRO2   delta 1-pyrroline-5-carboxylate synthetase 
 sot-r.1   102582423   delta-1-pyrroline-5-carboxylate synthase 
 sot-r.1   102594541   delta-1-pyrroline-5-carboxylate synthase-like 
 nta-r.1   107773204   delta-1-pyrroline-5-carboxylate synthase 
 nta-r.1   107776743   delta-1-pyrroline-5-carboxylate synthase 
 nta-r.1   107797411   delta-1-pyrroline-5-carboxylate synthase 
 osa-u.5   P5CS1   delta-1-pyrroline-5-carboxylate synthase 1-like 
 osa-u.5   4324853   delta-1-pyrroline-5-carboxylate synthase 2-like 
 zma-u.5   103630430   delta-1-pyrroline-5-carboxylate synthase-like 
 zma-u.5   100280719   uncharacterized LOC100280719 
 zma-u.5   778431   proline responding1 
 tae-r.2   606368   delta-1-pyrroline-5-carboxylate synthase 1 
 tae-r.2   123071410   delta-1-pyrroline-5-carboxylate synthase 2 
 tae-r.2   123182224   delta-1-pyrroline-5-carboxylate synthase 1 
 hvu-r.1   123445639   delta-1-pyrroline-5-carboxylate synthase 1 
 hvu-r.1   123444897   delta-1-pyrroline-5-carboxylate synthase 2 
 sbi-r.1   8072535   delta-1-pyrroline-5-carboxylate synthase 1 
 sbi-r.1   110430201   delta-1-pyrroline-5-carboxylate synthase 1 
 sbi-r.1   110433516   delta-1-pyrroline-5-carboxylate synthase 2 
 bdi-r.1   100822226   delta-1-pyrroline-5-carboxylate synthase 1 
 bdi-r.1   100823447   delta-1-pyrroline-5-carboxylate synthase 2 
 cre-r.1   CHLRE_03g146527v5   uncharacterized protein 

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Top 50 coexpressed genes to P5CS1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to P5CS1 (ath-r.7 coexpression data)

CoexMap"818566"


athP5CS1 | Entrez gene ID : 818566      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 1 2 3 2 2 3 2 3 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0055129 [list] [network] L-proline biosynthetic process  (7 genes)  IMP TAS  
GO:0009269 [list] [network] response to desiccation  (24 genes)  IEP  
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IEP IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IGI  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0017084 [list] [network] delta1-pyrroline-5-carboxylate synthetase activity  (1 genes)  ISS  
Protein NP_001189714.1 [sequence] [blastp]
NP_001189715.1 [sequence] [blastp]
NP_181510.1 [sequence] [blastp]
NP_973641.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  chlo 3,  nucl 1,  cyto 1,  plas 1,  extr 1,  vacu 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for NP_001189714.1)
chlo 3,  E.R. 3,  nucl 1,  chlo_mito 1,  cyto 1,  plas 1,  extr 1,  vacu 1,  cysk_nucl 1,  cyto_plas 1  (predict for NP_001189715.1)
E.R. 4,  chlo 3,  nucl 1,  cyto 1,  plas 1,  extr 1,  vacu 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for NP_181510.1)
chlo 3,  plas 2,  nucl 1,  vacu 1,  E.R. 1,  chlo_mito 1,  E.R._vacu 1,  cyto_plas 1  (predict for NP_973641.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001189714.1)
other 6,  mito 3  (predict for NP_001189715.1)
other 6,  mito 3  (predict for NP_181510.1)
other 7  (predict for NP_973641.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
P5CS1
ath-u.5
for
P5CS1
ath-e.2
for
P5CS1
ath-u.5
for
P5CS2
bra-r.6
for
103867010
bra-r.6
for
103865746
bna-r.1
for
106445364
bna-r.1
for
106391557
bna-r.1
for
106395965
ghi-r.1
for
107899340
ghi-r.1
for
107935332
ghi-r.1
for
107940896
cit-r.1
for
102619471
cit-r.1
for
102609124
gma-u.5
for
ALDH18B1
gma-u.5
for
ALDH18B4
gma-u.5
for
ALDH18B2
vvi-u.5
for
P5CS
ppo-u.5
for
7490371
ppo-u.5
for
18101402
mtr-u.5
for
25491556
mtr-u.5
for
25498588
mtr-u.5
for
11410328
sly-u.5
for
101244293
sly-u.5
for
PRO2
sot-r.1
for
102582423
sot-r.1
for
102594541
nta-r.1
for
107773204
nta-r.1
for
107776743
nta-r.1
for
107797411
osa-u.5
for
P5CS1
osa-u.5
for
4324853
zma-u.5
for
103630430
zma-u.5
for
100280719
zma-u.5
for
778431
tae-r.2
for
606368
tae-r.2
for
123071410
tae-r.2
for
123182224
hvu-r.1
for
123445639
hvu-r.1
for
123444897
sbi-r.1
for
8072535
sbi-r.1
for
110430201
sbi-r.1
for
110433516
bdi-r.1
for
100822226
bdi-r.1
for
100823447
cre-r.1
for
CHLRE_03g146527v5


Ortholog ID: 2021
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol P5CS1 P5CS2 LOC103867010 LOC103865746 LOC106445364 LOC106391557 LOC106415918 LOC107899340 LOC107935332 LOC107940896 LOC102619471 LOC102609124 ALDH18B4 ALDH18B2 LOC100791063 P5CS LOC7490371 LOC18101402 LOC25491556 LOC25498588 LOC11410328 LOC101244293 PRO2 LOC102582423 LOC102594541 LOC107773204 LOC107797411 LOC107819560 P5CS1 LOC4324853 LOC103630430 LOC100280719 LOC778431 LOC123182224 LOC123062592 LOC123079750 LOC123445639 LOC123444897 LOC8072535 LOC110430201 LOC110433516 LOC100822226 LOC100823447 CHLRE_03g146527v5
Function* delta1-pyrroline-5-carboxylate synthase 1 delta 1-pyrroline-5-carboxylate synthase 2 delta-1-pyrroline-5-carboxylate synthase A delta-1-pyrroline-5-carboxylate synthase A delta-1-pyrroline-5-carboxylate synthase B delta-1-pyrroline-5-carboxylate synthase A delta-1-pyrroline-5-carboxylate synthase B-like delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase-like delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase pyrroline-5-carboxylate synthetase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase-like delta 1-pyrroline-5-carboxylate synthetase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase-like delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase delta-1-pyrroline-5-carboxylate synthase-like delta-1-pyrroline-5-carboxylate synthase 1-like delta-1-pyrroline-5-carboxylate synthase 2-like delta-1-pyrroline-5-carboxylate synthase-like uncharacterized LOC100280719 proline responding1 delta-1-pyrroline-5-carboxylate synthase 1 delta-1-pyrroline-5-carboxylate synthase 2 delta-1-pyrroline-5-carboxylate synthase 2 delta-1-pyrroline-5-carboxylate synthase 1 delta-1-pyrroline-5-carboxylate synthase 2 delta-1-pyrroline-5-carboxylate synthase 1 delta-1-pyrroline-5-carboxylate synthase 1 delta-1-pyrroline-5-carboxylate synthase 2 delta-1-pyrroline-5-carboxylate synthase 1 delta-1-pyrroline-5-carboxylate synthase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00330 Arginine and proline metabolism 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00330 Arginine and proline metabolism 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00053 Ascorbate and aldarate metabolism 4
ghi00561 Glycerolipid metabolism 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 3
ghi01230 Biosynthesis of amino acids 2
ghi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00330 Arginine and proline metabolism 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00511 Other glycan degradation 3
gma00531 Glycosaminoglycan degradation 3
gma04142 Lysosome 3
gma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
gma00330 Arginine and proline metabolism 2
gma01230 Biosynthesis of amino acids 2
gma04016 MAPK signaling pathway - plant 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
vvi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 5
ppo00190 Oxidative phosphorylation 4
ppo01230 Biosynthesis of amino acids 4
ppo01200 Carbon metabolism 3
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00330 Arginine and proline metabolism 4
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00330 Arginine and proline metabolism 7
mtr01230 Biosynthesis of amino acids 6
mtr00710 Carbon fixation by Calvin cycle 3
mtr01200 Carbon metabolism 3
mtr00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00230 Purine metabolism 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly00940 Phenylpropanoid biosynthesis 3
sly00941 Flavonoid biosynthesis 3
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00510 N-Glycan biosynthesis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00020 Citrate cycle (TCA cycle) 4
sot00620 Pyruvate metabolism 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 4
nta00330 Arginine and proline metabolism 2
nta00904 Diterpenoid biosynthesis 2
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta00330 Arginine and proline metabolism 2
nta01230 Biosynthesis of amino acids 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
osa04145 Phagosome 7
osa04142 Lysosome 3
osa00970 Aminoacyl-tRNA biosynthesis 2
osa00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 3
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
osa00190 Oxidative phosphorylation 3
osa04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma00330 Arginine and proline metabolism 2
zma01230 Biosynthesis of amino acids 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 5
zma01230 Biosynthesis of amino acids 5
zma00710 Carbon fixation by Calvin cycle 4
zma00564 Glycerophospholipid metabolism 4
zma00220 Arginine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00330 Arginine and proline metabolism 2
zma01230 Biosynthesis of amino acids 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 8
tae00330 Arginine and proline metabolism 6
tae01230 Biosynthesis of amino acids 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00330 Arginine and proline metabolism 3
tae01230 Biosynthesis of amino acids 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00330 Arginine and proline metabolism 3
tae01230 Biosynthesis of amino acids 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
hvu00330 Arginine and proline metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00330 Arginine and proline metabolism 3
sbi00250 Alanine, aspartate and glutamate metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00330 Arginine and proline metabolism 4
sbi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
sbi00250 Alanine, aspartate and glutamate metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00280 Valine, leucine and isoleucine degradation 8
bdi00640 Propanoate metabolism 4
bdi00785 Lipoic acid metabolism 3
bdi01210 2-Oxocarboxylic acid metabolism 3
bdi04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 5
bdi01200 Carbon metabolism 4
bdi00020 Citrate cycle (TCA cycle) 3
bdi01210 2-Oxocarboxylic acid metabolism 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818566 824727 103867010 103865746 106445364 106391557 106415918 107899340 107935332 107940896 102619471 102609124 100816150 100809989 100791063 100232881 7490371 18101402 25491556 25498588 11410328 101244293 544281 102582423 102594541 107773204 107797411 107819560 4338979 4324853 103630430 100280719 778431 123182224 123062592 123079750 123445639 123444897 8072535 110430201 110433516 100822226 100823447 5721215
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