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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT5G56190   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT1G36070   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT1G55680   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103859511   uncharacterized WD repeat-containing protein C2A9.03 
 bra-r.6   103871026   uncharacterized WD repeat-containing protein C2A9.03 
 bra-r.6   103845056   uncharacterized WD repeat-containing protein C2A9.03 
 bna-r.1   106345780   uncharacterized WD repeat-containing protein C2A9.03-like 
 bna-r.1   BNAA08G00370D   uncharacterized WD repeat-containing protein C2A9.03 
 bna-r.1   106354575   uncharacterized WD repeat-containing protein C2A9.03 
 ghi-r.1   107931167   uncharacterized WD repeat-containing protein C2A9.03 
 ghi-r.1   107914713   uncharacterized WD repeat-containing protein C2A9.03 
 ghi-r.1   107911519   WD repeat-containing protein 38 
 cit-r.1   102614324   uncharacterized WD repeat-containing protein C2A9.03 
 cit-r.1   102623249   hypothetical protein 
 cit-r.1   102630799   hypothetical protein 
 gma-u.5   100817036   uncharacterized WD repeat-containing protein C2A9.03 
 gma-u.5   100813227   uncharacterized WD repeat-containing protein C2A9.03 
 gma-u.5   100796330   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100267825   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100249746   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100853597   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7463209   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7462019   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7466189   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   25489425   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   11440314   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   11407503   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101249070   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101253942   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101258599   uncharacterized WD repeat-containing protein C2A9.03 
 sot-r.1   102581983   uncharacterized WD repeat-containing protein C2A9.03-like 
 nta-r.1   107768798   putative WD repeat-containing protein C2A9.03 
 nta-r.1   107770846   putative WD repeat-containing protein C2A9.03 
 nta-r.1   107826542   putative WD repeat-containing protein C2A9.03 
 osa-u.5   4332995   uncharacterized WD repeat-containing protein C2A9.03 
 osa-u.5   4340270   uncharacterized WD repeat-containing protein C2A9.03 
 osa-u.5   4345539   uncharacterized WD repeat-containing protein C2A9.03 
 zma-u.5   100274637   uncharacterized LOC100274637 
 zma-u.5   100274157   Transducin/WD40 repeat-like superfamily protein 
 zma-u.5   100280227   uncharacterized LOC100280227 
 tae-r.2   123138060   uncharacterized WD repeat-containing protein C2A9.03 
 tae-r.2   123138061   uncharacterized LOC123138061 
 tae-r.2   123146985   uncharacterized WD repeat-containing protein C2A9.03 
 hvu-r.1   123407097   uncharacterized WD repeat-containing protein C2A9.03-like 
 hvu-r.1   123410865   uncharacterized WD repeat-containing protein C2A9.03-like 
 hvu-r.1   123408849   uncharacterized WD repeat-containing protein C2A9.03-like 
 sbi-r.1   8072833   uncharacterized WD repeat-containing protein C2A9.03 
 sbi-r.1   8080108   uncharacterized WD repeat-containing protein C2A9.03 
 sbi-r.1   8077722   uncharacterized WD repeat-containing protein C2A9.03 
 bdi-r.1   100829527   uncharacterized WD repeat-containing protein C2A9.03 
 bdi-r.1   100835439   uncharacterized WD repeat-containing protein C2A9.03 
 bdi-r.1   100835750   uncharacterized WD repeat-containing protein C2A9.03 
 cre-r.1   CHLRE_09g391875v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G13340 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G13340 (ath-r.7 coexpression data)

CoexMap"820534"


athAT3G13340 | Entrez gene ID : 820534      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 3 3 3 3 3 3 1 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001189878.1 [sequence] [blastp]
NP_001319539.1 [sequence] [blastp]
NP_566453.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  pero 1  (predict for NP_001189878.1)
nucl 6,  chlo 1,  pero 1  (predict for NP_001319539.1)
nucl 6,  chlo 1,  pero 1  (predict for NP_566453.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001189878.1)
other 9  (predict for NP_001319539.1)
other 9  (predict for NP_566453.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT3G13340
ath-u.5
for
AT3G13340
ath-m.9
for
AT3G13340
ath-e.2
for
AT3G13340
ath-m.4.bio
for
AT3G13340
ath-m.4.hor
for
AT3G13340
ath-m.4.lig
for
AT3G13340
ath-m.4.str
for
AT3G13340
ath-m.4.tis
for
AT3G13340
ath-u.5
for
AT5G56190
ath-u.5
for
AT1G36070
ath-u.5
for
AT1G55680
bra-r.6
for
103859511
bra-r.6
for
103871026
bra-r.6
for
103845056
bna-r.1
for
106345780
bna-r.1
for
BNAA08G00370D
bna-r.1
for
106354575
ghi-r.1
for
107931167
ghi-r.1
for
107914713
ghi-r.1
for
107911519
cit-r.1
for
102614324
cit-r.1
for
102623249
cit-r.1
for
102630799
gma-u.5
for
100817036
gma-u.5
for
100813227
gma-u.5
for
100796330
vvi-u.5
for
100267825
vvi-u.5
for
100249746
vvi-u.5
for
100853597
ppo-u.5
for
7463209
ppo-u.5
for
7462019
ppo-u.5
for
7466189
mtr-u.5
for
25489425
mtr-u.5
for
11440314
mtr-u.5
for
11407503
sly-u.5
for
101249070
sly-u.5
for
101253942
sly-u.5
for
101258599
sot-r.1
for
102581983
nta-r.1
for
107768798
nta-r.1
for
107770846
nta-r.1
for
107826542
osa-u.5
for
4332995
osa-u.5
for
4340270
osa-u.5
for
4345539
zma-u.5
for
100274637
zma-u.5
for
100274157
zma-u.5
for
100280227
tae-r.2
for
123138060
tae-r.2
for
123138061
tae-r.2
for
123146985
hvu-r.1
for
123407097
hvu-r.1
for
123410865
hvu-r.1
for
123408849
sbi-r.1
for
8072833
sbi-r.1
for
8080108
sbi-r.1
for
8077722
bdi-r.1
for
100829527
bdi-r.1
for
100835439
bdi-r.1
for
100835750
cre-r.1
for
CHLRE_09g391875v5


Ortholog ID: 392
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol AT3G13340 AT1G36070 AT1G55680 LOC103859511 LOC103871026 LOC103851842 LOC106361349 LOC106416657 LOC106429194 LOC107931167 LOC107905039 LOC107910177 LOC102614324 LOC102623249 LOC102630799 LOC100808557 LOC100775453 LOC100791929 LOC100267825 LOC100249746 LOC100853597 LOC7463209 LOC7471712 LOC18103567 LOC25489425 LOC11440314 LOC11407503 LOC101249070 LOC101253942 LOC102602920 LOC107826542 LOC107813762 LOC107816559 LOC4332995 LOC4340270 LOC4330559 LOC103638309 LOC100384791 LOC100192544 LOC123138060 LOC123138061 LOC123168556 LOC123410865 LOC123407811 LOC123402776 LOC8072576 LOC8063495 LOC8073539 LOC100829527 LOC100835439 LOC100845572 CHLRE_09g391875v5
Function* Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 hypothetical protein hypothetical protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03-like putative WD repeat-containing protein C2A9.03 putative WD repeat-containing protein C2A9.03 putative WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized LOC100384791 Transducin/WD40 repeat-like superfamily protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized LOC123138061 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 4
bna00511 Other glycan degradation 2
bna04016 MAPK signaling pathway - plant 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 3
ghi01240 Biosynthesis of cofactors 3
ghi03020 RNA polymerase 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00592 alpha-Linolenic acid metabolism 2
ghi00640 Propanoate metabolism 2
ghi01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04517 IgSF CAM signaling 2
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma04144 Endocytosis 3
gma03250 Viral life cycle - HIV-1 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 6
vvi03040 Spliceosome 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03060 Protein export 2
mtr04141 Protein processing in endoplasmic reticulum 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 2
sly00480 Glutathione metabolism 2
sly00052 Galactose metabolism 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00562 Inositol phosphate metabolism 2
sly04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 4
sot00260 Glycine, serine and threonine metabolism 3
sot00250 Alanine, aspartate and glutamate metabolism 2
sot00270 Cysteine and methionine metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta04814 Motor proteins 2
nta04075 Plant hormone signal transduction 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00052 Galactose metabolism 3
osa04016 MAPK signaling pathway - plant 3
osa04075 Plant hormone signal transduction 3
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00410 beta-Alanine metabolism 2
osa00640 Propanoate metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma04145 Phagosome 2
zma00760 Nicotinate and nicotinamide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00220 Arginine biosynthesis 3
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00710 Carbon fixation by Calvin cycle 3
zma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 3
hvu00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820534 840511 842017 103859511 103871026 103851842 106361349 106416657 106429194 107931167 107905039 107910177 102614324 102623249 102630799 100808557 100775453 100791929 100267825 100249746 100853597 7463209 7471712 18103567 25489425 11440314 11407503 101249070 101253942 102602920 107826542 107813762 107816559 4332995 4340270 4330559 103638309 100384791 100192544 123138060 123138061 123168556 123410865 123407811 123402776 8072576 8063495 8073539 100829527 100835439 100845572 5720230
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