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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT3G13340   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT5G56190   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT1G36070   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT1G55680   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100817036   uncharacterized WD repeat-containing protein C2A9.03 
 gma-u.5   100813227   uncharacterized WD repeat-containing protein C2A9.03 
 gma-u.5   100796330   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100267825   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100249746   uncharacterized WD repeat-containing protein C2A9.03 
 vvi-u.5   100853597   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7463209   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7462019   uncharacterized WD repeat-containing protein C2A9.03 
 ppo-u.5   7466189   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   25489425   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   11440314   uncharacterized WD repeat-containing protein C2A9.03 
 mtr-u.5   11407503   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101249070   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101253942   uncharacterized WD repeat-containing protein C2A9.03 
 sly-u.5   101258599   uncharacterized WD repeat-containing protein C2A9.03 
 osa-u.5   4332995   uncharacterized WD repeat-containing protein C2A9.03 
 osa-u.5   4340270   uncharacterized WD repeat-containing protein C2A9.03 
 osa-u.5   4345539   uncharacterized WD repeat-containing protein C2A9.03 
 zma-u.5   100274637   uncharacterized LOC100274637 
 zma-u.5   100274157   Transducin/WD40 repeat-like superfamily protein 
 zma-u.5   100280227   uncharacterized LOC100280227 

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Top 50 coexpressed genes to AT3G13340 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G13340 (ath-u.5 coexpression data)

CoexMap"820534"


athAT3G13340 | Entrez gene ID : 820534      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 12 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001189878.1 [sequence] [blastp]
NP_001319539.1 [sequence] [blastp]
NP_566453.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  pero 1  (predict for NP_001189878.1)
nucl 6,  chlo 1,  pero 1  (predict for NP_001319539.1)
nucl 6,  chlo 1,  pero 1  (predict for NP_566453.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001189878.1)
other 9  (predict for NP_001319539.1)
other 9  (predict for NP_566453.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G13340

.
ath-r.7
for
AT3G13340

.
ath-m.9
for
AT3G13340

.
ath-e.2
for
AT3G13340

.
ath-m.4.bio
for
AT3G13340

.
ath-m.4.hor
for
AT3G13340

.
ath-m.4.lig
for
AT3G13340

.
ath-m.4.str
for
AT3G13340

.
ath-m.4.tis
for
AT3G13340

.
ath-u.5
for
AT5G56190

.
ath-u.5
for
AT1G36070

.
ath-u.5
for
AT1G55680

.
gma-u.5
for
100817036

.
gma-u.5
for
100813227

.
gma-u.5
for
100796330

.
vvi-u.5
for
100267825

.
vvi-u.5
for
100249746

.
vvi-u.5
for
100853597

.
ppo-u.5
for
7463209

.
ppo-u.5
for
7462019

.
ppo-u.5
for
7466189

.
mtr-u.5
for
25489425

.
mtr-u.5
for
11440314

.
mtr-u.5
for
11407503

.
sly-u.5
for
101249070

.
sly-u.5
for
101253942

.
sly-u.5
for
101258599

.
osa-u.5
for
4332995

.
osa-u.5
for
4340270

.
osa-u.5
for
4345539

.
zma-u.5
for
100274637

.
zma-u.5
for
100274157

.
zma-u.5
for
100280227

.


Ortholog ID: 392
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi cit cit bdi bdi nta nta
Symbol AT1G55680 AT3G13340 LOC100775453 LOC100808557 LOC101249070 LOC4340270 LOC4330559 LOC100384791 LOC100192544 LOC103871026 LOC103859511 LOC100267825 LOC100853597 LOC18103567 LOC7463209 LOC25489425 LOC11407503 LOC123138060 LOC123138061 LOC123402776 LOC123410865 LOC107905039 LOC107931167 LOC106361349 LOC106429194 CHLRE_09g391875v5 LOC8063495 LOC8073539 LOC102623249 LOC102614324 LOC100845572 LOC100829527 LOC107826542 LOC107816559
Function* Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized LOC100384791 Transducin/WD40 repeat-like superfamily protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized LOC123138061 uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03-like uncharacterized protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 hypothetical protein uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 uncharacterized WD repeat-containing protein C2A9.03 putative WD repeat-containing protein C2A9.03 putative WD repeat-containing protein C2A9.03
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 2
sly00480 Glutathione metabolism 2
sly00052 Galactose metabolism 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00410 beta-Alanine metabolism 2
osa00640 Propanoate metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00220 Arginine biosynthesis 3
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00710 Carbon fixation by Calvin cycle 3
zma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 6
vvi03040 Spliceosome 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03060 Protein export 2
mtr04141 Protein processing in endoplasmic reticulum 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 3
hvu00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00592 alpha-Linolenic acid metabolism 2
ghi00640 Propanoate metabolism 2
ghi01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 3
ghi01240 Biosynthesis of cofactors 3
ghi03020 RNA polymerase 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 4
bna00511 Other glycan degradation 2
bna04016 MAPK signaling pathway - plant 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04517 IgSF CAM signaling 2
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842017 820534 100775453 100808557 101249070 4340270 4330559 100384791 100192544 103871026 103859511 100267825 100853597 18103567 7463209 25489425 11407503 123138060 123138061 123402776 123410865 107905039 107931167 106361349 106429194 5720230 8063495 8073539 102623249 102614324 100845572 100829527 107826542 107816559
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