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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-u.5   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.9   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-e.2   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.4.bio   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.4.hor   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.4.lig   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.4.str   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 ath-m.4.tis   RFC3   Translation elongation factor EF1B/ribosomal protein S6 family protein 
 bra-r.6   103839669   nucleolar transcription factor 1-A 
 bna-r.1   106437134   nucleolar transcription factor 1 
 bna-r.1   106401850   glutamic acid-rich protein 
 ghi-r.1   107916220   acidic leucine-rich nuclear phosphoprotein 32 family member A 
 ghi-r.1   107896404   putative vacuolar protein sorting-associated protein 13F 
 cit-r.1   102607783   protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 
 gma-u.5   100790128   uncharacterized LOC100790128 
 gma-u.5   100812111   uncharacterized LOC100812111 
 vvi-u.5   100243195   protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 
 ppo-u.5   7471092   protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 
 mtr-u.5   11416822   uncharacterized LOC11416822 
 sly-u.5   101245198   ribosomal protein S6-like protein 
 sot-r.1   102594367   uncharacterized LOC102594367 
 nta-r.1   107759286   protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 
 nta-r.1   107764056   protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 
 zma-u.5   100284375   30S ribosomal protein S6-like 
 tae-r.2   123119752   uncharacterized LOC123119752 
 tae-r.2   123110746   uncharacterized LOC123110746 
 tae-r.2   123102554   uncharacterized LOC123102554 
 hvu-r.1   123452761   uncharacterized LOC123452761 
 sbi-r.1   8068847   uncharacterized LOC8068847 
 bdi-r.1   100824031   30S ribosomal protein S6 

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Top 50 coexpressed genes to RFC3 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RFC3 (ath-r.7 coexpression data)

CoexMap"820974"


athRFC3 | Entrez gene ID : 820974      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi osa cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042794 [list] [network] plastid rRNA transcription  (5 genes)  IMP  
GO:0010071 [list] [network] root meristem specification  (6 genes)  IMP  
GO:0042793 [list] [network] plastid transcription  (15 genes)  IMP  
GO:0051644 [list] [network] plastid localization  (24 genes)  IMP  
GO:2000023 [list] [network] regulation of lateral root development  (31 genes)  IMP  
GO:0080022 [list] [network] primary root development  (40 genes)  IMP  
GO:0010082 [list] [network] regulation of root meristem growth  (44 genes)  IMP  
GO:0010109 [list] [network] regulation of photosynthesis  (48 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005840 [list] [network] ribosome  (328 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566568.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 1,  mito 1,  nucl_plas 1  (predict for NP_566568.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_566568.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
RFC3
ath-u.5
for
RFC3
ath-m.9
for
RFC3
ath-e.2
for
RFC3
ath-m.4.bio
for
RFC3
ath-m.4.hor
for
RFC3
ath-m.4.lig
for
RFC3
ath-m.4.str
for
RFC3
ath-m.4.tis
for
RFC3
bra-r.6
for
103839669
bna-r.1
for
106437134
bna-r.1
for
106401850
ghi-r.1
for
107916220
ghi-r.1
for
107896404
cit-r.1
for
102607783
gma-u.5
for
100790128
gma-u.5
for
100812111
vvi-u.5
for
100243195
ppo-u.5
for
7471092
mtr-u.5
for
11416822
sly-u.5
for
101245198
sot-r.1
for
102594367
nta-r.1
for
107759286
nta-r.1
for
107764056
zma-u.5
for
100284375
tae-r.2
for
123119752
tae-r.2
for
123110746
tae-r.2
for
123102554
hvu-r.1
for
123452761
sbi-r.1
for
8068847
bdi-r.1
for
100824031


Ortholog ID: 10774
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta zma tae tae tae hvu sbi bdi
Symbol RFC3 LOC103839669 LOC106437134 LOC106401850 LOC107916220 LOC107896404 LOC102607783 LOC100790128 LOC100812111 LOC100243195 LOC7471092 LOC11416822 LOC101245198 LOC102594367 LOC107759286 LOC107764056 LOC100284375 LOC123119752 LOC123110746 LOC123102554 LOC123452761 LOC8068847 LOC100824031
Function* Translation elongation factor EF1B/ribosomal protein S6 family protein nucleolar transcription factor 1-A nucleolar transcription factor 1 glutamic acid-rich protein acidic leucine-rich nuclear phosphoprotein 32 family member A putative vacuolar protein sorting-associated protein 13F protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic uncharacterized LOC100790128 uncharacterized LOC100812111 protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic uncharacterized LOC11416822 ribosomal protein S6-like protein uncharacterized LOC102594367 protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic protein REGULATOR OF FATTY ACID COMPOSITION 3, chloroplastic 30S ribosomal protein S6-like uncharacterized LOC123119752 uncharacterized LOC123110746 uncharacterized LOC123102554 uncharacterized LOC123452761 uncharacterized LOC8068847 30S ribosomal protein S6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820974 103839669 106437134 106401850 107916220 107896404 102607783 100790128 100812111 100243195 7471092 11416822 101245198 102594367 107759286 107764056 100284375 123119752 123110746 123102554 123452761 8068847 100824031
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