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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   emb2076   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103875086   pentatricopeptide repeat-containing protein At3g29290 
 bna-r.1   106410954   pentatricopeptide repeat-containing protein At3g29290 
 bna-r.1   106349122   pentatricopeptide repeat-containing protein At3g29290 
 ghi-r.1   121221094   pentatricopeptide repeat-containing protein At3g29290 
 ghi-r.1   107888556   pentatricopeptide repeat-containing protein At3g29290 
 cit-r.1   102618823   pentatricopeptide repeat-containing protein At3g29290 
 gma-u.5   100781960   pentatricopeptide repeat-containing protein At3g29290 
 gma-u.5   100779515   pentatricopeptide repeat-containing protein At3g29290 
 vvi-u.5   100266202   pentatricopeptide repeat-containing protein At3g29290 
 ppo-u.5   7467875   pentatricopeptide repeat-containing protein At3g29290 
 mtr-u.5   11434812   pentatricopeptide repeat-containing protein At3g29290 
 sly-u.5   101265496   pentatricopeptide repeat-containing protein At3g29290 
 sot-r.1   102592612   pentatricopeptide repeat-containing protein At3g29290 
 nta-r.1   107777868   pentatricopeptide repeat-containing protein At3g29290-like 
 nta-r.1   107817066   pentatricopeptide repeat-containing protein At3g29290 
 zma-u.5   100382024   Pentatricopeptide repeat-containing protein 
 zma-u.5   103642304   pentatricopeptide repeat-containing protein At3g29290 
 tae-r.2   123093009   pentatricopeptide repeat-containing protein At3g29290 
 tae-r.2   123085043   pentatricopeptide repeat-containing protein At3g29290 
 tae-r.2   123098289   pentatricopeptide repeat-containing protein At3g29290 
 hvu-r.1   123449344   pentatricopeptide repeat-containing protein At3g29290 
 sbi-r.1   8054211   pentatricopeptide repeat-containing protein At3g29290 
 bdi-r.1   100839338   pentatricopeptide repeat-containing protein At3g29290 
 cre-r.1   CHLRE_08g358250v5   uncharacterized protein 

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Top 50 coexpressed genes to emb2076 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to emb2076 (ath-r.7 coexpression data)

CoexMap"822586"


athemb2076 | Entrez gene ID : 822586      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 2 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001325599.1 [sequence] [blastp]
NP_001325600.1 [sequence] [blastp]
NP_001325601.1 [sequence] [blastp]
NP_001325602.1 [sequence] [blastp]
NP_189575.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_001325599.1)
chlo 7,  nucl 2  (predict for NP_001325600.1)
chlo 7,  nucl 2  (predict for NP_001325601.1)
chlo 7,  nucl 2  (predict for NP_001325602.1)
chlo 7,  nucl 2  (predict for NP_189575.2)
Subcellular
localization
TargetP
chlo 2  (predict for NP_001325599.1)
chlo 2  (predict for NP_001325600.1)
chlo 2  (predict for NP_001325601.1)
chlo 2  (predict for NP_001325602.1)
chlo 2  (predict for NP_189575.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
emb2076
ath-u.5
for
emb2076
ath-m.9
for
emb2076
ath-e.2
for
emb2076
ath-m.4.bio
for
emb2076
ath-m.4.hor
for
emb2076
ath-m.4.lig
for
emb2076
ath-m.4.str
for
emb2076
ath-m.4.tis
for
emb2076
bra-r.6
for
103875086
bna-r.1
for
106410954
bna-r.1
for
106349122
ghi-r.1
for
121221094
ghi-r.1
for
107888556
cit-r.1
for
102618823
gma-u.5
for
100781960
gma-u.5
for
100779515
vvi-u.5
for
100266202
ppo-u.5
for
7467875
mtr-u.5
for
11434812
sly-u.5
for
101265496
sot-r.1
for
102592612
nta-r.1
for
107777868
nta-r.1
for
107817066
zma-u.5
for
100382024
zma-u.5
for
103642304
tae-r.2
for
123093009
tae-r.2
for
123085043
tae-r.2
for
123098289
hvu-r.1
for
123449344
sbi-r.1
for
8054211
bdi-r.1
for
100839338
cre-r.1
for
CHLRE_08g358250v5


Ortholog ID: 9519
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta zma zma tae tae tae hvu sbi bdi cre
Symbol emb2076 LOC103875086 LOC106410954 LOC106349122 LOC121221094 LOC107888556 LOC102618823 LOC100781960 LOC100779515 LOC100266202 LOC7467875 LOC11434812 LOC101265496 LOC102592612 LOC107777868 LOC107817066 LOC100382024 LOC103642304 LOC123093009 LOC123085043 LOC123098289 LOC123449344 LOC8054211 LOC100839338 CHLRE_08g358250v5
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290-like pentatricopeptide repeat-containing protein At3g29290 Pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 pentatricopeptide repeat-containing protein At3g29290 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae03060 Protein export 2
tae04141 Protein processing in endoplasmic reticulum 2
tae04145 Phagosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822586 103875086 106410954 106349122 121221094 107888556 102618823 100781960 100779515 100266202 7467875 11434812 101265496 102592612 107777868 107817066 100382024 103642304 123093009 123085043 123098289 123449344 8054211 100839338 5727782
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