ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-u.5	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.9	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-e.2	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.4.bio	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.4.hor	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.4.lig	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.4.str	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-m.4.tis	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-u.5	AT2G17580	Polynucleotide adenylyltransferase family protein
ath-u.5	AT5G23690	Polynucleotide adenylyltransferase family protein
ath-u.5	AT1G28090	Polynucleotide adenylyltransferase family protein
bra-r.6	103838989	poly(A) polymerase I
bra-r.6	103874114	uncharacterized LOC103874114
bra-r.6	103874237	poly(A) polymerase I
bna-r.1	111206220	poly(A) polymerase I
bna-r.1	106447053	uncharacterized LOC106447053
bna-r.1	BNAC03G74530D	uncharacterized BNAC03G74530D
ghi-r.1	107946881	CCA-adding enzyme
ghi-r.1	107955089	uncharacterized LOC107955089
ghi-r.1	107955619	uncharacterized LOC107955619
cit-r.1	102608253	uncharacterized LOC102608253
cit-r.1	102627987	uncharacterized LOC102627987
gma-u.5	100796540	poly(A) polymerase I
gma-u.5	100790939	poly(A) polymerase I
gma-u.5	100794882	uncharacterized LOC100794882
vvi-u.5	100259104	uncharacterized LOC100259104
vvi-u.5	104879172	uncharacterized LOC104879172
ppo-u.5	7454593	uncharacterized LOC7454593
ppo-u.5	7457572	uncharacterized LOC7457572
ppo-u.5	7480453	uncharacterized LOC7480453
mtr-u.5	11435625	CCA-adding enzyme
mtr-u.5	11405782	uncharacterized LOC11405782
mtr-u.5	25491148	CCA-adding enzyme
sly-u.5	101251959	uncharacterized LOC101251959
sly-u.5	101265314	uncharacterized LOC101265314
sly-u.5	101268130	uncharacterized LOC101268130
sot-r.1	102592062	uncharacterized LOC102592062
sot-r.1	102596961	poly(A) polymerase I
sot-r.1	102603580	poly(A) polymerase I-like
nta-r.1	107812113	uncharacterized LOC107812113
nta-r.1	107790548	uncharacterized LOC107790548
nta-r.1	107823040	uncharacterized LOC107823040
osa-u.5	4331511	uncharacterized LOC4331511
osa-u.5	4335699	poly(A) polymerase I
zma-u.5	100382483	Polynucleotide adenylyltransferase family protein
zma-u.5	100502264	uncharacterized LOC100502264
tae-r.2	123045332	poly(A) polymerase I
tae-r.2	123053170	poly(A) polymerase I
tae-r.2	123093606	poly(A) polymerase I
hvu-r.1	123449775	poly(A) polymerase I-like
hvu-r.1	123426571	poly(A) polymerase I
sbi-r.1	8061429	poly(A) polymerase I
sbi-r.1	8072012	poly(A) polymerase I
bdi-r.1	100821667	uncharacterized LOC100821667
bdi-r.1	100829983	poly(A) polymerase I
cre-r.1	CHLRE_14g625950v5	uncharacterized protein

Top 50 coexpressed genes to AT3G48830 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G48830 (ath-r.7 coexpression data)

CoexMap"824044"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	ISM

GO MF

GO:0016779 [list] [network] nucleotidyltransferase activity

(73 genes)

IEA

Protein

NP_001319712.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1

(predict for NP_001319712.1)

Subcellular
localization
TargetP

scret 9, mito 3

(predict for NP_001319712.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT3G48830	ath-u.5 for AT3G48830	ath-m.9 for AT3G48830	ath-e.2 for AT3G48830	ath-m.4.bio for AT3G48830	ath-m.4.hor for AT3G48830	ath-m.4.lig for AT3G48830	ath-m.4.str for AT3G48830	ath-m.4.tis for AT3G48830	ath-u.5 for AT2G17580	ath-u.5 for AT5G23690	ath-u.5 for AT1G28090	bra-r.6 for 103838989	bra-r.6 for 103874114	bra-r.6 for 103874237	bna-r.1 for 111206220	bna-r.1 for 106447053	bna-r.1 for BNAC03G74530D	ghi-r.1 for 107946881	ghi-r.1 for 107955089	ghi-r.1 for 107955619	cit-r.1 for 102608253	cit-r.1 for 102627987	gma-u.5 for 100796540	gma-u.5 for 100790939	gma-u.5 for 100794882	vvi-u.5 for 100259104	vvi-u.5 for 104879172	ppo-u.5 for 7454593	ppo-u.5 for 7457572	ppo-u.5 for 7480453	mtr-u.5 for 11435625	mtr-u.5 for 11405782	mtr-u.5 for 25491148	sly-u.5 for 101251959	sly-u.5 for 101265314	sly-u.5 for 101268130	sot-r.1 for 102592062	sot-r.1 for 102596961	sot-r.1 for 102603580	nta-r.1 for 107812113	nta-r.1 for 107790548	nta-r.1 for 107823040	osa-u.5 for 4331511	osa-u.5 for 4335699	zma-u.5 for 100382483	zma-u.5 for 100502264	tae-r.2 for 123045332	tae-r.2 for 123053170	tae-r.2 for 123093606	hvu-r.1 for 123449775	hvu-r.1 for 123426571	sbi-r.1 for 8061429	sbi-r.1 for 8072012	bdi-r.1 for 100821667	bdi-r.1 for 100829983	cre-r.1 for CHLRE_14g625950v5

Ortholog

Ortholog ID: 2125

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Polynucleotide adenylyltransferase family protein

poly(A) polymerase I

uncharacterized LOC103874114

poly(A) polymerase I

uncharacterized BNAC03G74530D

poly(A) polymerase I

CCA-adding enzyme

uncharacterized LOC107955089

poly(A) polymerase I

uncharacterized LOC102608253

uncharacterized LOC102627987

poly(A) polymerase I

uncharacterized LOC100794882

CCA-adding enzyme

uncharacterized LOC100259104

uncharacterized LOC104879172

uncharacterized LOC7454593

uncharacterized LOC7457572

uncharacterized LOC7496538

CCA-adding enzyme

uncharacterized LOC11405782

CCA-adding enzyme

uncharacterized LOC101251959

uncharacterized LOC101265314

uncharacterized LOC101268130

uncharacterized LOC102592062

poly(A) polymerase I-like

uncharacterized LOC102605830

uncharacterized LOC107812113

uncharacterized LOC107827603

uncharacterized LOC107761486

uncharacterized LOC4331511

poly(A) polymerase I

Polynucleotide adenylyltransferase family protein

uncharacterized LOC100502264

poly(A) polymerase I

poly(A) polymerase I-like

poly(A) polymerase I

uncharacterized LOC100821667

poly(A) polymerase I

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00790	Folate biosynthesis	2
cit01240	Biosynthesis of cofactors	2
cit04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	4
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	4
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00051	Fructose and mannose metabolism	2
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma00541	Biosynthesis of various nucleotide sugars	2
zma01240	Biosynthesis of cofactors	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu00860	Porphyrin metabolism	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

816265

832434

839702

103838989

103874114

103874237

106380568

106367292

106348313

107946881

107955089

107946608

102608253

102627987

100796540

100794882

100801072

100259104

104879172

7454593

7457572

7496538

11435625

11405782

25491148

101251959

101265314

101268130

102592062

102603580

102605830

107812113

107827603

107761486

4331511

4335699

100382483

100502264

123093606

123105810

123189082

123449775

123426571

8061429

8072012

100821667

100829983

5718292

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	2	3	2	3	3	3	3	3	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G48830 (ath-r.7 coexpression data)

Top 50 enrichment test to AT3G48830 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**