ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102596961	poly(A) polymerase I
sot-r.1	102603580	poly(A) polymerase I-like
sot-r.1	102592062	uncharacterized LOC102592062
sot-r.1	102605830	uncharacterized LOC102605830
sly-u.5	101254858	uncharacterized LOC101254858
sly-u.5	101251959	uncharacterized LOC101251959
sly-u.5	101268130	uncharacterized LOC101268130
nta-r.1	107827603	uncharacterized LOC107827603
nta-r.1	107823040	uncharacterized LOC107823040
nta-r.1	107812113	uncharacterized LOC107812113
ath-u.5	AT2G17580	Polynucleotide adenylyltransferase family protein
ath-u.5	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-u.5	AT5G23690	Polynucleotide adenylyltransferase family protein
gma-u.5	100790939	poly(A) polymerase I
gma-u.5	100796540	poly(A) polymerase I
gma-u.5	100801072	CCA-adding enzyme
bra-r.6	103874114	uncharacterized LOC103874114
bra-r.6	103838989	poly(A) polymerase I
bra-r.6	103874237	poly(A) polymerase I
vvi-u.5	104879172	uncharacterized LOC104879172
vvi-u.5	100259104	uncharacterized LOC100259104
ppo-u.5	7454593	uncharacterized LOC7454593
ppo-u.5	7480453	uncharacterized LOC7480453
ppo-u.5	7496538	uncharacterized LOC7496538
mtr-u.5	25491148	CCA-adding enzyme
mtr-u.5	11435625	CCA-adding enzyme
mtr-u.5	11405782	uncharacterized LOC11405782
ghi-r.1	107946608	poly(A) polymerase I
ghi-r.1	107946881	CCA-adding enzyme
ghi-r.1	107955089	uncharacterized LOC107955089
bna-r.1	106447053	uncharacterized LOC106447053
bna-r.1	BNAC03G74530D	uncharacterized BNAC03G74530D
bna-r.1	111206220	poly(A) polymerase I
cit-r.1	102627987	uncharacterized LOC102627987
cit-r.1	102608253	uncharacterized LOC102608253
osa-u.5	4335699	poly(A) polymerase I
osa-u.5	4331511	uncharacterized LOC4331511
zma-u.5	100382483	Polynucleotide adenylyltransferase family protein
zma-u.5	100502264	uncharacterized LOC100502264
tae-r.2	123053170	poly(A) polymerase I
tae-r.2	123093606	poly(A) polymerase I
tae-r.2	123098878	poly(A) polymerase I
hvu-r.1	123449775	poly(A) polymerase I-like
hvu-r.1	123426571	poly(A) polymerase I
sbi-r.1	8072012	poly(A) polymerase I
sbi-r.1	8061429	poly(A) polymerase I
bdi-r.1	100821667	uncharacterized LOC100821667
bdi-r.1	100829983	poly(A) polymerase I
cre-r.1	CHLRE_14g625950v5	uncharacterized protein

Top 50 coexpressed genes to 102596961 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102596961 (sot-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

poly(A) polymerase I

KEGG

GO BP

GO:0006396 [list] [network] RNA processing

(579 genes)

IEA

GO CC

GO MF

GO:0016779 [list] [network] nucleotidyltransferase activity	(107 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1335 genes)	IEA

Protein

XP_006363976.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 2

(predict for XP_006363976.1)

Subcellular
localization
TargetP

mito 5

(predict for XP_006363976.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102596961	sot-r.1 for 102603580	sot-r.1 for 102592062	sot-r.1 for 102605830	sly-u.5 for 101254858	sly-u.5 for 101251959	sly-u.5 for 101268130	nta-r.1 for 107827603	nta-r.1 for 107823040	nta-r.1 for 107812113	ath-u.5 for AT2G17580	ath-u.5 for AT3G48830	ath-u.5 for AT5G23690	gma-u.5 for 100790939	gma-u.5 for 100796540	gma-u.5 for 100801072	bra-r.6 for 103874114	bra-r.6 for 103838989	bra-r.6 for 103874237	vvi-u.5 for 104879172	vvi-u.5 for 100259104	ppo-u.5 for 7454593	ppo-u.5 for 7480453	ppo-u.5 for 7496538	mtr-u.5 for 25491148	mtr-u.5 for 11435625	mtr-u.5 for 11405782	ghi-r.1 for 107946608	ghi-r.1 for 107946881	ghi-r.1 for 107955089	bna-r.1 for 106447053	bna-r.1 for BNAC03G74530D	bna-r.1 for 111206220	cit-r.1 for 102627987	cit-r.1 for 102608253	osa-u.5 for 4335699	osa-u.5 for 4331511	zma-u.5 for 100382483	zma-u.5 for 100502264	tae-r.2 for 123053170	tae-r.2 for 123093606	tae-r.2 for 123098878	hvu-r.1 for 123449775	hvu-r.1 for 123426571	sbi-r.1 for 8072012	sbi-r.1 for 8061429	bdi-r.1 for 100821667	bdi-r.1 for 100829983	cre-r.1 for CHLRE_14g625950v5

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Ortholog

Ortholog ID: 2125

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

poly(A) polymerase I-like

uncharacterized LOC102592062

uncharacterized LOC102605830

uncharacterized LOC101251959

uncharacterized LOC101268130

uncharacterized LOC101265314

uncharacterized LOC107827603

uncharacterized LOC107812113

uncharacterized LOC107761486

Polynucleotide adenylyltransferase family protein

poly(A) polymerase I

CCA-adding enzyme

uncharacterized LOC100794882

uncharacterized LOC103874114

poly(A) polymerase I

uncharacterized LOC104879172

uncharacterized LOC100259104

uncharacterized LOC7454593

uncharacterized LOC7496538

uncharacterized LOC7457572

CCA-adding enzyme

uncharacterized LOC11405782

poly(A) polymerase I

CCA-adding enzyme

uncharacterized LOC107955089

uncharacterized BNAC03G74530D

poly(A) polymerase I

uncharacterized LOC102627987

uncharacterized LOC102608253

poly(A) polymerase I

uncharacterized LOC4331511

Polynucleotide adenylyltransferase family protein

uncharacterized LOC100502264

poly(A) polymerase I

poly(A) polymerase I-like

poly(A) polymerase I

uncharacterized LOC100821667

poly(A) polymerase I

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	4
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	4
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00790	Folate biosynthesis	2
cit01240	Biosynthesis of cofactors	2
cit04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00051	Fructose and mannose metabolism	2
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma00541	Biosynthesis of various nucleotide sugars	2
zma01240	Biosynthesis of cofactors	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu00860	Porphyrin metabolism	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

102603580

102592062

102605830

101251959

101268130

101265314

107827603

107812113

107761486

816265

832434

839702

100796540

100801072

100794882

103874114

103838989

103874237

104879172

100259104

7454593

7496538

7457572

25491148

11435625

11405782

107946608

107946881

107955089

106380568

106367292

106348313

102627987

102608253

4335699

4331511

100382483

100502264

123093606

123189082

123105810

123449775

123426571

8072012

8061429

100821667

100829983

5718292

The preparation time of this page was 0.3 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	2	3	3	3	3	2	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102596961 (sot-r.1 coexpression data)

Top 50 enrichment test to 102596961 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**