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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   CCD1   carotenoid cleavage dioxygenase 1 
 ath-u.5   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.9   CCD1   carotenoid cleavage dioxygenase 1 
 ath-e.2   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.4.bio   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.4.hor   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.4.lig   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.4.str   CCD1   carotenoid cleavage dioxygenase 1 
 ath-m.4.tis   CCD1   carotenoid cleavage dioxygenase 1 
 bra-r.6   103862738   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 bra-r.6   103842221   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 bna-r.1   106396750   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 bna-r.1   106444915   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 bna-r.1   106396759   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 ghi-r.1   107950632   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ghi-r.1   107915783   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 cit-r.1   102616031   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 cit-r.1   102615521   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 gma-u.5   100789210   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 vvi-u.5   100249903   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 vvi-u.5   CCD1   9,10[9',10']carotenoid cleavage dioxygenase 
 ppo-u.5   7463846   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ppo-u.5   7465013   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 ppo-u.5   7480077   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 mtr-u.5   25501065   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 mtr-u.5   25501064   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 sly-u.5   CCD1A   carotenoid cleavage dioxygenase 1A 
 sly-u.5   CCD1B   carotenoid cleavage dioxygenase 1B 
 sot-r.1   102589202   carotenoid 9,10(9',10')-cleavage dioxygenase 1 
 sot-r.1   102582614   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 sot-r.1   102588663   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 nta-r.1   107817469   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 nta-r.1   107817468   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 nta-r.1   107817154   carotenoid 9,10(9',10')-cleavage dioxygenase 1-like 
 osa-u.5   4352923   carotenoid 9,10(9',10')-cleavage dioxygenase 
 zma-u.5   732715   white cap1 
 tae-r.2   123110040   carotenoid 9,10(9',10')-cleavage dioxygenase 
 tae-r.2   123101914   carotenoid 9,10(9',10')-cleavage dioxygenase 
 tae-r.2   123106216   carotenoid 9,10(9',10')-cleavage dioxygenase-like 
 hvu-r.1   123395340   carotenoid 9,10(9',10')-cleavage dioxygenase-like 
 hvu-r.1   123451037   carotenoid 9,10(9',10')-cleavage dioxygenase-like 
 sbi-r.1   8080590   carotenoid 9,10(9',10')-cleavage dioxygenase 
 bdi-r.1   100821646   carotenoid 9,10(9',10')-cleavage dioxygenase 
 bdi-r.1   100832496   carotenoid 9,10(9',10')-cleavage dioxygenase 
 cre-r.1   CHLRE_12g488350v5   uncharacterized protein 
 cre-r.1   CHLRE_16g657750v5   uncharacterized protein 
 cre-r.1   CHLRE_16g657800v5   uncharacterized protein 

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Top 50 coexpressed genes to CCD1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCD1 (ath-r.7 coexpression data)

CoexMap"825527"


athCCD1 | Entrez gene ID : 825527      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 2 1 2 3 2 2 3 3 1 1 3 2 1 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016124 [list] [network] xanthophyll catabolic process  (3 genes)  IMP  
GO:0016118 [list] [network] carotenoid catabolic process  (4 genes)  IDA  
GO:0016121 [list] [network] carotene catabolic process  (4 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0045549 [list] [network] 9-cis-epoxycarotenoid dioxygenase activity  (7 genes)  IDA  
Protein NP_191911.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  mito 1,  pero 1  (predict for NP_191911.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_191911.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
CCD1
ath-u.5
for
CCD1
ath-m.9
for
CCD1
ath-e.2
for
CCD1
ath-m.4.bio
for
CCD1
ath-m.4.hor
for
CCD1
ath-m.4.lig
for
CCD1
ath-m.4.str
for
CCD1
ath-m.4.tis
for
CCD1
bra-r.6
for
103862738
bra-r.6
for
103842221
bna-r.1
for
106396750
bna-r.1
for
106444915
bna-r.1
for
106396759
ghi-r.1
for
107950632
ghi-r.1
for
107915783
cit-r.1
for
102616031
cit-r.1
for
102615521
gma-u.5
for
100789210
vvi-u.5
for
100249903
vvi-u.5
for
CCD1
ppo-u.5
for
7463846
ppo-u.5
for
7465013
ppo-u.5
for
7480077
mtr-u.5
for
25501065
mtr-u.5
for
25501064
sly-u.5
for
CCD1A
sly-u.5
for
CCD1B
sot-r.1
for
102589202
sot-r.1
for
102582614
sot-r.1
for
102588663
nta-r.1
for
107817469
nta-r.1
for
107817468
nta-r.1
for
107817154
osa-u.5
for
4352923
zma-u.5
for
732715
tae-r.2
for
123110040
tae-r.2
for
123101914
tae-r.2
for
123106216
hvu-r.1
for
123395340
hvu-r.1
for
123451037
sbi-r.1
for
8080590
bdi-r.1
for
100821646
bdi-r.1
for
100832496
cre-r.1
for
CHLRE_12g488350v5
cre-r.1
for
CHLRE_16g657750v5
cre-r.1
for
CHLRE_16g657800v5


Ortholog ID: 3244
Species ath bra bra bna bna bna ghi ghi cit cit gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa zma tae tae hvu hvu sbi bdi bdi cre cre cre
Symbol CCD1 LOC103862738 LOC103842221 LOC106396750 LOC106368590 LOC106368588 LOC107950632 LOC107915783 LOC102616031 LOC102615521 LOC100789210 LOC100249903 CCD1 LOC7465013 LOC7480077 LOC18102041 LOC25501064 LOC25501062 CCD1A CCD1B LOC102589202 LOC102582614 LOC102588663 LOC107817468 LOC107817154 LOC107830214 LOC4352923 LOC732715 LOC123110040 LOC123113824 LOC123395340 LOC123451037 LOC8080590 LOC100821646 LOC100832496 CHLRE_16g657750v5 CHLRE_16g657800v5 CHLRE_03g149650v5
Function* carotenoid cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 9,10[9',10']carotenoid cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid cleavage dioxygenase 1A carotenoid cleavage dioxygenase 1B carotenoid 9,10(9',10')-cleavage dioxygenase 1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase 1-like carotenoid 9,10(9',10')-cleavage dioxygenase white cap1 carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase-like carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase carotenoid 9,10(9',10')-cleavage dioxygenase uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 3
cit01200 Carbon metabolism 2
cit00860 Porphyrin metabolism 2
cit04016 MAPK signaling pathway - plant 2
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 4
mtr00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00196 Photosynthesis - antenna proteins 2
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00196 Photosynthesis - antenna proteins 2
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
nta00195 Photosynthesis 3
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu00910 Nitrogen metabolism 2
hvu01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825527 103862738 103842221 106396750 106368590 106368588 107950632 107915783 102616031 102615521 100789210 100249903 100232972 7465013 7480077 18102041 25501064 25501062 543935 544269 102589202 102582614 102588663 107817468 107817154 107830214 4352923 732715 123110040 123113824 123395340 123451037 8080590 100821646 100832496 5723400 5723401 5721164
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