ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT5G03990	FK506-binding-like protein
ath-u.5	AT5G03990	FK506-binding-like protein
ath-e.2	AT5G03990	FK506-binding-like protein
ath-u.5	AT3G51940	oxidoreductase/transition metal ion-binding protein
bra-r.6	103841131	uncharacterized LOC103841131
bra-r.6	103847342	uncharacterized LOC103847342
bna-r.1	106372663	uncharacterized LOC106372663
bna-r.1	106433835	uncharacterized LOC106433835
bna-r.1	106402757	uncharacterized LOC106402757
ghi-r.1	107920124	uncharacterized LOC107920124
cit-r.1	102616992	uncharacterized LOC102616992
cit-r.1	102616074	uncharacterized LOC102616074
gma-u.5	100797066	uncharacterized LOC100797066
gma-u.5	100794939	uncharacterized LOC100794939
gma-u.5	102664732	bifunctional endo-1,4-beta-xylanase XylA
vvi-u.5	100241733	uncharacterized LOC100241733
ppo-u.5	7473593	uncharacterized LOC7473593
ppo-u.5	7483962	uncharacterized LOC7483962
mtr-u.5	11443723	uncharacterized LOC11443723
mtr-u.5	25499011	uncharacterized LOC25499011
mtr-u.5	11415353	uncharacterized LOC11415353
sly-u.5	104647318	uncharacterized LOC104647318
sot-r.1	102592317	protein RNA-directed DNA methylation 3
nta-r.1	107800253	uncharacterized LOC107800253
nta-r.1	107824983	uncharacterized LOC107824983
osa-u.5	9269556	uncharacterized LOC9269556
osa-u.5	4327962	uncharacterized LOC4327962
osa-u.5	107277791	uncharacterized LOC107277791
zma-u.5	100193010	uncharacterized LOC100193010
zma-u.5	100193422	uncharacterized LOC100193422
zma-u.5	103651662	uncharacterized LOC103651662
tae-r.2	123103061	uncharacterized LOC123103061
tae-r.2	123062319	uncharacterized LOC123062319
tae-r.2	123111237	uncharacterized LOC123111237
hvu-r.1	123444622	uncharacterized LOC123444622
hvu-r.1	123396528	uncharacterized LOC123396528
sbi-r.1	8085630	uncharacterized LOC8085630
sbi-r.1	110429591	translation initiation factor IF-2-like
sbi-r.1	8070357	uncharacterized LOC8070357
bdi-r.1	100838767	bifunctional endo-1,4-beta-xylanase XylA
bdi-r.1	100834260	trinucleotide repeat-containing gene 6B protein

Top 50 coexpressed genes to AT5G03990 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G03990 (ath-r.7 coexpression data)

CoexMap"830278"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001331630.1 [sequence] [blastp]
NP_568132.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, pero 1, cyto_pero 1	(predict for NP_001331630.1)
nucl 4, mito 4, chlo_mito 3, chlo 1	(predict for NP_568132.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001331630.1)
chlo 6, mito 5	(predict for NP_568132.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT5G03990	ath-u.5 for AT5G03990	ath-e.2 for AT5G03990	ath-u.5 for AT3G51940	bra-r.6 for 103841131	bra-r.6 for 103847342	bna-r.1 for 106372663	bna-r.1 for 106433835	bna-r.1 for 106402757	ghi-r.1 for 107920124	cit-r.1 for 102616992	cit-r.1 for 102616074	gma-u.5 for 100797066	gma-u.5 for 100794939	gma-u.5 for 102664732	vvi-u.5 for 100241733	ppo-u.5 for 7473593	ppo-u.5 for 7483962	mtr-u.5 for 11443723	mtr-u.5 for 25499011	mtr-u.5 for 11415353	sly-u.5 for 104647318	sot-r.1 for 102592317	nta-r.1 for 107800253	nta-r.1 for 107824983	osa-u.5 for 9269556	osa-u.5 for 4327962	osa-u.5 for 107277791	zma-u.5 for 100193010	zma-u.5 for 100193422	zma-u.5 for 103651662	tae-r.2 for 123103061	tae-r.2 for 123062319	tae-r.2 for 123111237	hvu-r.1 for 123444622	hvu-r.1 for 123396528	sbi-r.1 for 8085630	sbi-r.1 for 110429591	sbi-r.1 for 8070357	bdi-r.1 for 100838767	bdi-r.1 for 100834260

Ortholog

Ortholog ID: 2227

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

FK506-binding-like protein

oxidoreductase/transition metal ion-binding protein

uncharacterized LOC103841131

uncharacterized LOC103847342

uncharacterized LOC106372663

uncharacterized LOC106433835

uncharacterized LOC106367864

uncharacterized LOC107933297

uncharacterized LOC107936331

uncharacterized LOC102616992

uncharacterized LOC102616074

uncharacterized LOC100794939

bifunctional endo-1,4-beta-xylanase XylA

uncharacterized LOC100775807

uncharacterized LOC100241733

uncharacterized LOC7473593

uncharacterized LOC7483962

uncharacterized LOC11443723

uncharacterized LOC11415353

uncharacterized LOC11415354

uncharacterized LOC104647318

protein RNA-directed DNA methylation 3

uncharacterized LOC107800253

uncharacterized LOC107824983

uncharacterized LOC9269556

uncharacterized LOC4327962

uncharacterized LOC107277791

uncharacterized LOC103651662

uncharacterized LOC100277297

uncharacterized LOC103651103

uncharacterized LOC123062319

uncharacterized LOC123111237

uncharacterized LOC123079452

uncharacterized LOC123444622

uncharacterized LOC123396528

uncharacterized LOC8085630

translation initiation factor IF-2-like

bifunctional endo-1,4-beta-xylanase XylA

trinucleotide repeat-containing gene 6B protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03015	mRNA surveillance pathway	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna04075	Plant hormone signal transduction	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4
ghi04016	MAPK signaling pathway - plant	3
ghi04075	Plant hormone signal transduction	3
ghi00440	Phosphonate and phosphinate metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	3
gma04146	Peroxisome	2
gma00260	Glycine, serine and threonine metabolism	2
gma01230	Biosynthesis of amino acids	2
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	2
gma00450	Selenocompound metabolism	2
gma04145	Phagosome	2
gma04517	IgSF CAM signaling	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	3
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	4
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04145	Phagosome	2
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4

Expression

Expression pattern

Entrez Gene ID^*

830278

824357

103841131

103847342

106372663

106433835

106367864

107933297

107936331

102616992

102616074

100794939

102664732

100775807

100241733

7473593

7483962

11443723

11415353

11415354

104647318

102592317

107800253

107824983

9269556

4327962

107277791

103651662

100277297

103651103

123062319

123111237

123079452

123444622

123396528

8085630

110429591

100838767

100834260

The preparation time of this page was 3.7 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	1	2	3	1	2	3	1	1	2	3	3	3	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G03990 (ath-r.7 coexpression data)

Top 50 enrichment test to AT5G03990 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**