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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-u.5   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.9   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-e.2   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.bio   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.hor   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.lig   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.str   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.tis   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 bra-r.6   103827727   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 bna-r.1   106410388   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 bna-r.1   106400830   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107924600   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107946734   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107912190   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 cit-r.1   102615437   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 gma-u.5   100796315   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 gma-u.5   100780994   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 vvi-u.5   100259066   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ppo-u.5   18096950   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 mtr-u.5   11409834   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sly-u.5   101264145   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sot-r.1   102591024   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 nta-r.1   107811499   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 nta-r.1   107763956   pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like 
 zma-u.5   100191385   salt-inducible protein 
 tae-r.2   123123932   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sbi-r.1   8060693   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 

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Top 50 coexpressed genes to AT5G46580 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G46580 (ath-r.7 coexpression data)

CoexMap"834701"


athAT5G46580 | Entrez gene ID : 834701      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae sbi hvu bdi cre osa
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (15 genes)  IMP  
GO:0042254 [list] [network] ribosome biogenesis  (211 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0033902 [list] [network] rRNA endonuclease activity  (1 genes)  ISS  
GO:0004530 [list] [network] deoxyribonuclease I activity  (3 genes)  ISS  
GO:0042134 [list] [network] rRNA primary transcript binding  (3 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_199470.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_199470.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for NP_199470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT5G46580
ath-u.5
for
AT5G46580
ath-m.9
for
AT5G46580
ath-e.2
for
AT5G46580
ath-m.4.bio
for
AT5G46580
ath-m.4.hor
for
AT5G46580
ath-m.4.lig
for
AT5G46580
ath-m.4.str
for
AT5G46580
ath-m.4.tis
for
AT5G46580
bra-r.6
for
103827727
bna-r.1
for
106410388
bna-r.1
for
106400830
ghi-r.1
for
107924600
ghi-r.1
for
107946734
ghi-r.1
for
107912190
cit-r.1
for
102615437
gma-u.5
for
100796315
gma-u.5
for
100780994
vvi-u.5
for
100259066
ppo-u.5
for
18096950
mtr-u.5
for
11409834
sly-u.5
for
101264145
sot-r.1
for
102591024
nta-r.1
for
107811499
nta-r.1
for
107763956
zma-u.5
for
100191385
tae-r.2
for
123123932
sbi-r.1
for
8060693


Ortholog ID: 11753
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta zma tae sbi
Symbol AT5G46580 LOC103827727 LOC106410388 LOC106400830 LOC107924600 LOC107946734 LOC121211102 LOC102615437 LOC100796315 LOC100780994 LOC100259066 LOC18096950 LOC11409834 LOC101264145 LOC102591024 LOC107811499 LOC107763956 LOC100191385 LOC123123932 LOC8060693
Function* pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like salt-inducible protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834701 103827727 106410388 106400830 107924600 107946734 121211102 102615437 100796315 100780994 100259066 18096950 11409834 101264145 102591024 107811499 107763956 100191385 123123932 8060693
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