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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101264145   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sly-r.6   101264145   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ath-u.5   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 gma-u.5   100796315   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 gma-u.5   100780994   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 vvi-u.5   100259066   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ppo-u.5   18096950   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 mtr-u.5   11409834   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 zma-u.5   100191385   salt-inducible protein 

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Top 50 coexpressed genes to 101264145 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101264145 (sly-u.5 coexpression data)

CoexMap"101264145"


slyLOC101264145 | Entrez gene ID : 101264145    
Species sly ath gma vvi ppo mtr zma sbi nta bra osa cre cit hvu bdi sot tae bna ghi
Paralog 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045727 [list] [network] positive regulation of translation  (16 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (123 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (7 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004245879.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 2,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_004245879.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_004245879.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101264145

.
sly-r.6
for
101264145

.
ath-u.5
for
AT5G46580

.
gma-u.5
for
100796315

.
gma-u.5
for
100780994

.
vvi-u.5
for
100259066

.
ppo-u.5
for
18096950

.
mtr-u.5
for
11409834

.
zma-u.5
for
100191385

.


Ortholog ID: 11753
Species ath gma gma sly zma bra vvi ppo mtr tae ghi ghi bna bna sbi sot cit nta nta
Symbol AT5G46580 LOC100796315 LOC100780994 LOC101264145 LOC100191385 LOC103827727 LOC100259066 LOC18096950 LOC11409834 LOC123123932 LOC107924600 LOC121211102 LOC106400830 LOC106410388 LOC8060693 LOC102591024 LOC102615437 LOC107811499 LOC107763956
Function* pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic salt-inducible protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834701 100796315 100780994 101264145 100191385 103827727 100259066 18096950 11409834 123123932 107924600 121211102 106400830 106410388 8060693 102591024 102615437 107811499 107763956
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