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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121211102   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107946734   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107924600   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ghi-r.1   107912190   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ath-u.5   AT5G46580   pentatricopeptide (PPR) repeat-containing protein 
 bra-r.6   103827727   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 bna-r.1   106410388   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 bna-r.1   106400830   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 cit-r.1   102615437   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 gma-u.5   100796315   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 gma-u.5   100780994   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 vvi-u.5   100259066   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 ppo-u.5   18096950   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 mtr-u.5   11409834   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sly-u.5   101264145   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sot-r.1   102591024   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 nta-r.1   107763956   pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like 
 nta-r.1   107811499   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 zma-u.5   100191385   salt-inducible protein 
 tae-r.2   123123932   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 
 sbi-r.1   8060693   pentatricopeptide repeat-containing protein At5g46580, chloroplastic 

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Top 50 coexpressed genes to 121211102 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121211102 (ghi-r.1 coexpression data)

CoexMap"121211102"


ghiLOC121211102 | Entrez gene ID : 121211102    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta zma tae sbi bdi cre osa hvu
Paralog 4 1 1 2 1 2 1 1 1 1 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045727 [list] [network] positive regulation of translation  (53 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (302 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (12 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040939323.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  cyto 1,  cysk 1,  chlo 1,  plas 1  (predict for XP_040939323.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_040939323.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121211102
ghi-r.1
for
107946734
ghi-r.1
for
107924600
ghi-r.1
for
107912190
ath-u.5
for
AT5G46580
bra-r.6
for
103827727
bna-r.1
for
106410388
bna-r.1
for
106400830
cit-r.1
for
102615437
gma-u.5
for
100796315
gma-u.5
for
100780994
vvi-u.5
for
100259066
ppo-u.5
for
18096950
mtr-u.5
for
11409834
sly-u.5
for
101264145
sot-r.1
for
102591024
nta-r.1
for
107763956
nta-r.1
for
107811499
zma-u.5
for
100191385
tae-r.2
for
123123932
sbi-r.1
for
8060693


Ortholog ID: 11753
Species ghi ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta zma tae sbi
Symbol LOC121211102 LOC107946734 LOC107924600 AT5G46580 LOC103827727 LOC106410388 LOC106400830 LOC102615437 LOC100796315 LOC100780994 LOC100259066 LOC18096950 LOC11409834 LOC101264145 LOC102591024 LOC107763956 LOC107811499 LOC100191385 LOC123123932 LOC8060693
Function* pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like pentatricopeptide repeat-containing protein At5g46580, chloroplastic salt-inducible protein pentatricopeptide repeat-containing protein At5g46580, chloroplastic pentatricopeptide repeat-containing protein At5g46580, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121211102 107946734 107924600 834701 103827727 106410388 106400830 102615437 100796315 100780994 100259066 18096950 11409834 101264145 102591024 107763956 107811499 100191385 123123932 8060693
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