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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   PAP1   production of anthocyanin pigment 1 
 ath-u.5   PAP1   production of anthocyanin pigment 1 
 ath-m.9   PAP1   production of anthocyanin pigment 1 
 ath-e.2   PAP1   production of anthocyanin pigment 1 
 ath-m.4.bio   PAP1   production of anthocyanin pigment 1 
 ath-m.4.hor   PAP1   production of anthocyanin pigment 1 
 ath-m.4.lig   PAP1   production of anthocyanin pigment 1 
 ath-m.4.str   PAP1   production of anthocyanin pigment 1 
 ath-m.4.tis   PAP1   production of anthocyanin pigment 1 
 ath-u.5   MYB90   myb domain protein 90 
 bra-r.6   MYB3   transcription factor MYB114-like 
 bna-r.1   106440625   transcription factor MYB114-like 
 ghi-r.1   107892994   transcription factor MYB113-like 
 ghi-r.1   107893819   transcription factor MYB114 
 cit-r.1   102624703   transcription factor MYB114-like 
 sly-u.5   MYB75   transcription factor MYB75 
 sot-r.1   AN1   transcription factor R2R3-MYB 
 sot-r.1   102578889   transcription factor MYB113-like 
 sot-r.1   102590860   transcription factor MYB113 

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Top 50 coexpressed genes to PAP1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAP1 (ath-r.7 coexpression data)

CoexMap""


athPAP1 | Entrez gene ID : 842120      
Species ath bra bna ghi cit sly sot nta cre hvu gma ppo zma bdi vvi sbi mtr osa tae
Paralog 10 1 1 2 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function production of anthocyanin pigment 1
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0009745 [list] [network] sucrose mediated signaling  (4 genes)  IMP  
GO:0031542 [list] [network] positive regulation of anthocyanin biosynthetic process  (4 genes)  IMP  
GO:0071548 [list] [network] response to dexamethasone  (5 genes)  IEP  
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IMP  
GO:0009718 [list] [network] anthocyanin-containing compound biosynthetic process  (18 genes)  IMP  
GO:0031540 [list] [network] regulation of anthocyanin biosynthetic process  (18 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (26 genes)  IMP  
GO:0002239 [list] [network] response to oomycetes  (71 genes)  IEP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO:0009723 [list] [network] response to ethylene  (170 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176057.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_176057.1)
Subcellular
localization
TargetP
other 8  (predict for NP_176057.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
PAP1
ath-u.5
for
PAP1
ath-m.9
for
PAP1
ath-e.2
for
PAP1
ath-m.4.bio
for
PAP1
ath-m.4.hor
for
PAP1
ath-m.4.lig
for
PAP1
ath-m.4.str
for
PAP1
ath-m.4.tis
for
PAP1
ath-u.5
for
MYB90
bra-r.6
for
MYB3
bna-r.1
for
106440625
ghi-r.1
for
107892994
ghi-r.1
for
107893819
cit-r.1
for
102624703
sly-u.5
for
MYB75
sot-r.1
for
AN1
sot-r.1
for
102578889
sot-r.1
for
102590860

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Ortholog ID: 1822
Species ath bra ghi ghi cit vvi sly sot sot sot
Symbol PAP1 MYB3 LOC107892994 LOC107961901 LOC102624703 MYBA6 MYB75 AN1 LOC102590860 LOC102585603
Function* production of anthocyanin pigment 1 transcription factor MYB114-like transcription factor MYB113-like transcription factor MYB113-like transcription factor MYB114-like R2R3 MYB transcription factor transcription factor MYB75 transcription factor R2R3-MYB transcription factor MYB113 transcription factor MYB90-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00942 Anthocyanin biosynthesis 2
ath00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 4
sly00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 8
sot00944 Flavone and flavonol biosynthesis 3
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 7
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 8
sot04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842120 103852326 107892994 107961901 102624703 100243253 101247276 102577602 102590860 102585603
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