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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PAP1   production of anthocyanin pigment 1 
 ath-r.7   PAP1   production of anthocyanin pigment 1 
 ath-m.9   PAP1   production of anthocyanin pigment 1 
 ath-e.2   PAP1   production of anthocyanin pigment 1 
 ath-m.4.bio   PAP1   production of anthocyanin pigment 1 
 ath-m.4.hor   PAP1   production of anthocyanin pigment 1 
 ath-m.4.lig   PAP1   production of anthocyanin pigment 1 
 ath-m.4.str   PAP1   production of anthocyanin pigment 1 
 ath-m.4.tis   PAP1   production of anthocyanin pigment 1 
 ath-u.5   MYB90   myb domain protein 90 
 sly-u.5   MYB75   transcription factor MYB75 

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Top 50 coexpressed genes to PAP1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAP1 (ath-u.5 coexpression data)

CoexMap"842120"


athPAP1 | Entrez gene ID : 842120      
Species ath sly tae mtr osa zma bdi vvi sbi ppo bna nta cre sot hvu ghi gma cit bra
Paralog 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0009745 [list] [network] sucrose mediated signaling  (4 genes)  IMP  
GO:0031542 [list] [network] positive regulation of anthocyanin biosynthetic process  (4 genes)  IMP  
GO:0071548 [list] [network] response to dexamethasone  (5 genes)  IEP  
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IMP  
GO:0009718 [list] [network] anthocyanin-containing compound biosynthetic process  (18 genes)  IMP  
GO:0031540 [list] [network] regulation of anthocyanin biosynthetic process  (18 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (26 genes)  IMP  
GO:0002239 [list] [network] response to oomycetes  (71 genes)  IEP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO:0009723 [list] [network] response to ethylene  (170 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176057.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_176057.1)
Subcellular
localization
TargetP
other 8  (predict for NP_176057.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PAP1

.
ath-r.7
for
PAP1

.
ath-m.9
for
PAP1

.
ath-e.2
for
PAP1

.
ath-m.4.bio
for
PAP1

.
ath-m.4.hor
for
PAP1

.
ath-m.4.lig
for
PAP1

.
ath-m.4.str
for
PAP1

.
ath-m.4.tis
for
PAP1

.
ath-u.5
for
MYB90

.
sly-u.5
for
MYB75

.


Ortholog ID: 1822
Species ath sly bra vvi ghi sot sot cit
Symbol PAP1 MYB75 MYB3 MYBA6 LOC107892994 LOC102585603 LOC102590860 LOC102624703
Function* production of anthocyanin pigment 1 transcription factor MYB75 transcription factor MYB114-like R2R3 MYB transcription factor transcription factor MYB113-like transcription factor MYB90-like transcription factor MYB113 transcription factor MYB114-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00942 Anthocyanin biosynthesis 2
ath00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 4
sly00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 8
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 7
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00941 Flavonoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842120 101247276 103852326 100243253 107892994 102585603 102590860 102624703
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