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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-u.5   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.9   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-e.2   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.4.bio   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.4.hor   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.4.lig   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.4.str   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-m.4.tis   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-u.5   HEN2   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 bra-r.6   103870525   DExH-box ATP-dependent RNA helicase DExH10 
 bra-r.6   103838580   DExH-box ATP-dependent RNA helicase DExH9 
 bra-r.6   103829199   DExH-box ATP-dependent RNA helicase DExH9 
 bna-r.1   106418603   DExH-box ATP-dependent RNA helicase DExH9 
 bna-r.1   111197833   DExH-box ATP-dependent RNA helicase DExH10 
 bna-r.1   106434706   DExH-box ATP-dependent RNA helicase DExH9 
 ghi-r.1   107899861   DExH-box ATP-dependent RNA helicase DExH9 
 ghi-r.1   107961953   DExH-box ATP-dependent RNA helicase DExH9 
 ghi-r.1   107893491   DExH-box ATP-dependent RNA helicase DExH10 
 cit-r.1   102611776   DExH-box ATP-dependent RNA helicase DExH10 
 cit-r.1   102621716   DExH-box ATP-dependent RNA helicase DExH9 
 gma-u.5   100804792   DExH-box ATP-dependent RNA helicase DExH9 
 gma-u.5   100785694   DExH-box ATP-dependent RNA helicase DExH10 
 vvi-u.5   100246661   DExH-box ATP-dependent RNA helicase DExH10 
 vvi-u.5   100258243   DExH-box ATP-dependent RNA helicase DExH9 
 ppo-u.5   18098364   DExH-box ATP-dependent RNA helicase DExH9 
 ppo-u.5   7485515   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11442176   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11408570   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11442551   DExH-box ATP-dependent RNA helicase DExH9 
 sly-u.5   101262619   DExH-box ATP-dependent RNA helicase DExH10 
 sly-u.5   101261492   DExH-box ATP-dependent RNA helicase DExH10-like 
 sly-u.5   101257307   DExH-box ATP-dependent RNA helicase DExH9 
 sot-r.1   102587109   protein HUA ENHANCER 2-like 
 sot-r.1   102587942   protein HUA ENHANCER 2-like 
 sot-r.1   102605528   superkiller viralicidic activity 2-like 2 
 nta-r.1   107800695   DExH-box ATP-dependent RNA helicase DExH9 
 nta-r.1   107801795   DExH-box ATP-dependent RNA helicase DExH10 
 nta-r.1   107812229   DExH-box ATP-dependent RNA helicase DExH10 
 osa-u.5   4349924   DExH-box ATP-dependent RNA helicase DExH10 
 osa-u.5   9268439   DExH-box ATP-dependent RNA helicase DExH9 
 zma-u.5   103638180   DExH-box ATP-dependent RNA helicase DExH9 
 zma-u.5   103634889   DExH-box ATP-dependent RNA helicase DExH10 
 tae-r.2   123091275   DExH-box ATP-dependent RNA helicase DExH10 
 tae-r.2   123051960   DExH-box ATP-dependent RNA helicase DExH10 
 tae-r.2   123044089   DExH-box ATP-dependent RNA helicase DExH10 
 hvu-r.1   123425158   DExH-box ATP-dependent RNA helicase DExH10-like 
 hvu-r.1   123412777   DExH-box ATP-dependent RNA helicase DExH9 
 hvu-r.1   123447952   DExH-box ATP-dependent RNA helicase DExH10-like 
 sbi-r.1   8067882   DExH-box ATP-dependent RNA helicase DExH9 
 sbi-r.1   8078772   DExH-box ATP-dependent RNA helicase DExH10 
 bdi-r.1   100834961   DExH-box ATP-dependent RNA helicase DExH10 
 bdi-r.1   100822667   DExH-box ATP-dependent RNA helicase DExH9 
 cre-r.1   CHLRE_06g289950v5   uncharacterized protein 
 cre-r.1   CHLRE_02g117900v5   uncharacterized protein 

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Top 50 coexpressed genes to MTR4 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MTR4 (ath-r.7 coexpression data)

CoexMap"842269"


athMTR4 | Entrez gene ID : 842269      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 2 2 2 3 3 3 3 2 2 3 3 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0031125 [list] [network] rRNA 3'-end processing  (1 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_176185.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3  (predict for NP_176185.1)
Subcellular
localization
TargetP
other 8  (predict for NP_176185.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
MTR4
ath-u.5
for
MTR4
ath-m.9
for
MTR4
ath-e.2
for
MTR4
ath-m.4.bio
for
MTR4
ath-m.4.hor
for
MTR4
ath-m.4.lig
for
MTR4
ath-m.4.str
for
MTR4
ath-m.4.tis
for
MTR4
ath-u.5
for
HEN2
bra-r.6
for
103870525
bra-r.6
for
103838580
bra-r.6
for
103829199
bna-r.1
for
106418603
bna-r.1
for
111197833
bna-r.1
for
106434706
ghi-r.1
for
107899861
ghi-r.1
for
107961953
ghi-r.1
for
107893491
cit-r.1
for
102611776
cit-r.1
for
102621716
gma-u.5
for
100804792
gma-u.5
for
100785694
vvi-u.5
for
100246661
vvi-u.5
for
100258243
ppo-u.5
for
18098364
ppo-u.5
for
7485515
mtr-u.5
for
11442176
mtr-u.5
for
11408570
mtr-u.5
for
11442551
sly-u.5
for
101262619
sly-u.5
for
101261492
sly-u.5
for
101257307
sot-r.1
for
102587109
sot-r.1
for
102587942
sot-r.1
for
102605528
nta-r.1
for
107800695
nta-r.1
for
107801795
nta-r.1
for
107812229
osa-u.5
for
4349924
osa-u.5
for
9268439
zma-u.5
for
103638180
zma-u.5
for
103634889
tae-r.2
for
123091275
tae-r.2
for
123051960
tae-r.2
for
123044089
hvu-r.1
for
123425158
hvu-r.1
for
123412777
hvu-r.1
for
123447952
sbi-r.1
for
8067882
sbi-r.1
for
8078772
bdi-r.1
for
100834961
bdi-r.1
for
100822667
cre-r.1
for
CHLRE_06g289950v5
cre-r.1
for
CHLRE_02g117900v5


Ortholog ID: 2529
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi cre cre
Symbol MTR4 HEN2 LOC103870525 LOC103838580 LOC103829199 LOC111197833 LOC106434706 LOC106452760 LOC107899861 LOC107961953 LOC107888367 LOC102611776 LOC102621716 LOC100804792 LOC100785694 LOC100246661 LOC100258243 LOC18098364 LOC7485515 LOC11442176 LOC11408570 LOC11442551 LOC101262619 LOC101261492 LOC101257307 LOC102587109 LOC102587942 LOC102605528 LOC107800695 LOC107830836 LOC107766793 LOC4349924 LOC9268439 LOC103638180 LOC103634889 LOC123091275 LOC123086655 LOC123187841 LOC123425158 LOC123412777 LOC123447952 LOC8067882 LOC8078772 LOC100834961 LOC100822667 CHLRE_06g289950v5 CHLRE_02g117900v5
Function* RNA helicase, ATP-dependent, SK12/DOB1 protein RNA helicase, ATP-dependent, SK12/DOB1 protein DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10-like DExH-box ATP-dependent RNA helicase DExH9 protein HUA ENHANCER 2-like protein HUA ENHANCER 2-like superkiller viralicidic activity 2-like 2 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9-like DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10-like DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10-like DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03020 RNA polymerase 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03420 Nucleotide excision repair 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 5
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03020 RNA polymerase 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03040 Spliceosome 3
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03018 RNA degradation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma00310 Lysine degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03082 ATP-dependent chromatin remodeling 3
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03013 Nucleocytoplasmic transport 2
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 3
cre01232 Nucleotide metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842269 815269 103870525 103838580 103829199 111197833 106434706 106452760 107899861 107961953 107888367 102611776 102621716 100804792 100785694 100246661 100258243 18098364 7485515 11442176 11408570 11442551 101262619 101261492 101257307 102587109 102587942 102605528 107800695 107830836 107766793 4349924 9268439 103638180 103634889 123091275 123086655 123187841 123425158 123412777 123447952 8067882 8078772 100834961 100822667 5721076 5727993
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