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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g289950v5   uncharacterized protein 
 ath-u.5   HEN2   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 ath-u.5   MTR4   RNA helicase, ATP-dependent, SK12/DOB1 protein 
 gma-u.5   100804792   DExH-box ATP-dependent RNA helicase DExH9 
 gma-u.5   100785694   DExH-box ATP-dependent RNA helicase DExH10 
 sly-u.5   101257307   DExH-box ATP-dependent RNA helicase DExH9 
 sly-u.5   101262619   DExH-box ATP-dependent RNA helicase DExH10 
 sly-u.5   101261492   DExH-box ATP-dependent RNA helicase DExH10-like 
 osa-u.5   4349924   DExH-box ATP-dependent RNA helicase DExH10 
 osa-u.5   9268439   DExH-box ATP-dependent RNA helicase DExH9 
 zma-u.5   103634889   DExH-box ATP-dependent RNA helicase DExH10 
 zma-u.5   103638180   DExH-box ATP-dependent RNA helicase DExH9 
 vvi-u.5   100258243   DExH-box ATP-dependent RNA helicase DExH9 
 vvi-u.5   100246661   DExH-box ATP-dependent RNA helicase DExH10 
 ppo-u.5   18098364   DExH-box ATP-dependent RNA helicase DExH9 
 ppo-u.5   7485515   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11408570   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11442176   DExH-box ATP-dependent RNA helicase DExH10 
 mtr-u.5   11442551   DExH-box ATP-dependent RNA helicase DExH9 

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Top 50 coexpressed genes to CHLRE_06g289950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g289950v5 (cre-r.1 coexpression data)

CoexMap"5721076"


creCHLRE_06g289950v5 | Entrez gene ID : 5721076    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 2 2 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (26 genes)  IEA  
GO:0006401 [list] [network] RNA catabolic process  (67 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042924112.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_042924112.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_042924112.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g289950v5

.
ath-u.5
for
HEN2

.
ath-u.5
for
MTR4

.
gma-u.5
for
100804792

.
gma-u.5
for
100785694

.
sly-u.5
for
101257307

.
sly-u.5
for
101262619

.
sly-u.5
for
101261492

.
osa-u.5
for
4349924

.
osa-u.5
for
9268439

.
zma-u.5
for
103634889

.
zma-u.5
for
103638180

.
vvi-u.5
for
100258243

.
vvi-u.5
for
100246661

.
ppo-u.5
for
18098364

.
ppo-u.5
for
7485515

.
mtr-u.5
for
11408570

.
mtr-u.5
for
11442176

.
mtr-u.5
for
11442551

.


Ortholog ID: 2529
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol MTR4 HEN2 LOC100785694 LOC100804792 LOC101262619 LOC101257307 LOC9268439 LOC4349924 LOC103638180 LOC103634889 LOC103870525 LOC103838580 LOC100246661 LOC100258243 LOC7485515 LOC18098364 LOC11442176 LOC11442551 LOC123086655 LOC123091275 LOC123412777 LOC123425158 LOC107961953 LOC107899861 LOC106452760 LOC111197833 CHLRE_06g289950v5 CHLRE_02g117900v5 LOC8067882 LOC8078772 LOC102587942 LOC102605528 LOC102621716 LOC102611776 LOC100822667 LOC100834961 LOC107766793 LOC107830836
Function* RNA helicase, ATP-dependent, SK12/DOB1 protein RNA helicase, ATP-dependent, SK12/DOB1 protein DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10-like DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH10 uncharacterized protein uncharacterized protein DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 protein HUA ENHANCER 2-like superkiller viralicidic activity 2-like 2 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9 DExH-box ATP-dependent RNA helicase DExH10 DExH-box ATP-dependent RNA helicase DExH9-like DExH-box ATP-dependent RNA helicase DExH9
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03040 Spliceosome 3
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03018 RNA degradation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma00310 Lysine degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03020 RNA polymerase 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03420 Nucleotide excision repair 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 5
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03013 Nucleocytoplasmic transport 2
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 3
cre01232 Nucleotide metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842269 815269 100785694 100804792 101262619 101257307 9268439 4349924 103638180 103634889 103870525 103838580 100246661 100258243 7485515 18098364 11442176 11442551 123086655 123091275 123412777 123425158 107961953 107899861 106452760 111197833 5721076 5727993 8067882 8078772 102587942 102605528 102621716 102611776 100822667 100834961 107766793 107830836
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