ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-r.7	AT1G80620	S15/NS1, RNA-binding protein
ath-u.5	AT1G80620	S15/NS1, RNA-binding protein
ath-m.9	AT1G80620	S15/NS1, RNA-binding protein
ath-e.2	AT1G80620	S15/NS1, RNA-binding protein
ath-m.4.bio	AT1G80620	S15/NS1, RNA-binding protein
ath-m.4.hor	AT1G80620	S15/NS1, RNA-binding protein
ath-m.4.lig	AT1G80620	S15/NS1, RNA-binding protein
ath-m.4.str	AT1G80620	S15/NS1, RNA-binding protein
ath-m.4.tis	AT1G80620	S15/NS1, RNA-binding protein
ath-u.5	AT1G15810	S15/NS1, RNA-binding protein
bra-r.6	103832470	probable 37S ribosomal protein S28, mitochondrial
bra-r.6	103853231	probable 37S ribosomal protein S28, mitochondrial
bra-r.6	103872379	uncharacterized LOC103872379
bna-r.1	125604550	probable 37S ribosomal protein S28, mitochondrial
bna-r.1	BNAC06G40390D	uncharacterized BNAC06G40390D
bna-r.1	106413580	uncharacterized LOC106413580
ghi-r.1	121230805	uncharacterized LOC121230805
ghi-r.1	121218634	uncharacterized LOC121218634
cit-r.1	102625381	uncharacterized LOC102625381
gma-u.5	100527419	uncharacterized LOC100527419
gma-u.5	100820600	uncharacterized LOC100820600
vvi-u.5	100267570	uncharacterized LOC100267570
vvi-u.5	100257309	uncharacterized LOC100257309
ppo-u.5	7493208	uncharacterized LOC7493208
mtr-u.5	11420499	uncharacterized LOC11420499
sly-u.5	101252508	uncharacterized LOC101252508
sot-r.1	102602084	lisH domain-containing protein C1711.05-like
nta-r.1	107780524	uncharacterized LOC107780524
zma-u.5	100273039	S15/NS1 RNA-binding protein
zma-u.5	100283625	uncharacterized LOC100283625
tae-r.2	123128832	uncharacterized LOC123128832
tae-r.2	123139280	uncharacterized LOC123139280
tae-r.2	123145980	protein transport protein sec31
hvu-r.1	123401727	uncharacterized LOC123401727
sbi-r.1	8084657	formin-like protein 3
sbi-r.1	8074204	formin-like protein 7
bdi-r.1	100838592	protein diaphanous homolog 1
cre-r.1	CHLRE_06g264300v5	uncharacterized protein
cre-r.1	CHLRE_17g731250v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(75 genes)

IEA

Protein

NP_849914.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 4, plas 1, vacu 1

(predict for NP_849914.1)

Subcellular
localization
TargetP

chlo 7, mito 4

(predict for NP_849914.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT1G80620	ath-u.5 for AT1G80620	ath-m.9 for AT1G80620	ath-e.2 for AT1G80620	ath-m.4.bio for AT1G80620	ath-m.4.hor for AT1G80620	ath-m.4.lig for AT1G80620	ath-m.4.str for AT1G80620	ath-m.4.tis for AT1G80620	ath-u.5 for AT1G15810	bra-r.6 for 103832470	bra-r.6 for 103853231	bra-r.6 for 103872379	bna-r.1 for 125604550	bna-r.1 for BNAC06G40390D	bna-r.1 for 106413580	ghi-r.1 for 121230805	ghi-r.1 for 121218634	cit-r.1 for 102625381	gma-u.5 for 100527419	gma-u.5 for 100820600	vvi-u.5 for 100267570	vvi-u.5 for 100257309	ppo-u.5 for 7493208	mtr-u.5 for 11420499	sly-u.5 for 101252508	sot-r.1 for 102602084	nta-r.1 for 107780524	zma-u.5 for 100273039	zma-u.5 for 100283625	tae-r.2 for 123128832	tae-r.2 for 123139280	tae-r.2 for 123145980	hvu-r.1 for 123401727	sbi-r.1 for 8084657	sbi-r.1 for 8074204	bdi-r.1 for 100838592	cre-r.1 for CHLRE_06g264300v5	cre-r.1 for CHLRE_17g731250v5

Ortholog

Ortholog ID: 4640

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

S15/NS1, RNA-binding protein

probable 37S ribosomal protein S28, mitochondrial

uncharacterized LOC103872379

uncharacterized LOC103842880

uncharacterized BNAC06G40390D

uncharacterized LOC106413580

uncharacterized LOC106346809

uncharacterized LOC121230805

uncharacterized LOC121218634

uncharacterized LOC102625381

uncharacterized LOC100527419

uncharacterized LOC100820600

uncharacterized LOC100267570

uncharacterized LOC100257309

uncharacterized LOC7493208

uncharacterized LOC11420499

uncharacterized LOC101252508

lisH domain-containing protein C1711.05-like

uncharacterized LOC107780524

uncharacterized LOC4331046

S15/NS1 RNA-binding protein

uncharacterized LOC100283625

uncharacterized LOC123128832

uncharacterized LOC123139280

protein transport protein sec31

uncharacterized LOC123401727

formin-like protein 3

formin-like protein 7

protein diaphanous homolog 1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	3
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00230	Purine metabolism	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	5
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3
zma00970	Aminoacyl-tRNA biosynthesis	3
zma00220	Arginine biosynthesis	2
zma00240	Pyrimidine metabolism	2
zma00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	4

Expression

Expression pattern

Entrez Gene ID^*

844401

838150

103832470

103872379

103842880

106430754

106413580

106346809

121230805

121218634

102625381

100527419

100820600

100267570

100257309

7493208

11420499

101252508

102602084

107780524

4331046

100273039

100283625

123128832

123139280

123145980

123401727

8084657

8074204

100838592

5721977

5727082

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G80620 (ath-r.7 coexpression data)

Top 50 enrichment test to AT1G80620 (ath-r.7 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	zma	tae	hvu	sbi	bdi	cre	osa
Paralog	10	3	3	2	1	2	2	1	1	1	1	1	2	3	1	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G80620 (ath-r.7 coexpression data)

Top 50 enrichment test to AT1G80620 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**