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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   GRAS1   GRAS1 protein 
 sly-r.6   GRAS1   GRAS1 protein 
 sly-m.5   GRAS1   GRAS1 protein 
 sly-u.5   101252411   scarecrow-like transcription factor PAT1 
 sly-u.5   101247427   scarecrow-like protein 13 
 sly-u.5   101253917   scarecrow-like protein 21 
 ath-u.5   SCL21   SCARECROW-like 21 
 ath-u.5   SCL13   SCARECROW-like 13 
 ath-u.5   PAT1   GRAS family transcription factor 
 gma-u.5   100817987   scarecrow-like protein 13 
 gma-u.5   100796496   scarecrow-like transcription factor PAT1 
 gma-u.5   100808300   scarecrow-like transcription factor PAT1 
 vvi-u.5   100245041   scarecrow-like protein 21 
 vvi-u.5   100250258   scarecrow-like protein 21 
 vvi-u.5   100261403   scarecrow-like transcription factor PAT1 
 ppo-u.5   7455815   scarecrow-like protein 13 
 ppo-u.5   7463692   scarecrow-like protein 13 
 ppo-u.5   7468554   scarecrow-like transcription factor PAT1 
 mtr-u.5   11418702   scarecrow-like transcription factor PAT1 
 mtr-u.5   11439575   scarecrow-like protein 13 
 osa-u.5   4348466   scarecrow-like transcription factor PAT1 
 osa-u.5   4343735   chitin-inducible gibberellin-responsive protein 2-like 
 osa-u.5   4331920   scarecrow-like protein 21 
 zma-u.5   100502252   uncharacterized LOC100502252 
 zma-u.5   100384069   uncharacterized LOC100384069 
 zma-u.5   100383464   uncharacterized LOC100383464 

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Top 50 coexpressed genes to GRAS1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GRAS1 (sly-u.5 coexpression data)

CoexMap"100037497"


slyGRAS1 | Entrez gene ID : 100037497      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 6 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (778 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1125 genes)  IEA  
Protein NP_001234305.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_001234305.2)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for NP_001234305.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
GRAS1
sly-r.6
for
GRAS1
sly-m.5
for
GRAS1
sly-u.5
for
101252411
sly-u.5
for
101247427
sly-u.5
for
101253917
ath-u.5
for
SCL21
ath-u.5
for
SCL13
ath-u.5
for
PAT1
gma-u.5
for
100817987
gma-u.5
for
100796496
gma-u.5
for
100808300
vvi-u.5
for
100245041
vvi-u.5
for
100250258
vvi-u.5
for
100261403
ppo-u.5
for
7455815
ppo-u.5
for
7463692
ppo-u.5
for
7468554
mtr-u.5
for
11418702
mtr-u.5
for
11439575
osa-u.5
for
4348466
osa-u.5
for
4343735
osa-u.5
for
4331920
zma-u.5
for
100502252
zma-u.5
for
100384069
zma-u.5
for
100383464


Ortholog ID: 912
Species sly sly sot sot nta nta ath ath gma gma bra bra vvi vvi ppo ppo mtr mtr ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC101260037 LOC101253917 LOC102591653 LOC102590638 LOC107797043 LOC107827767 SCL5 SCL13 LOC100817987 LOC100796496 LOC103837238 LOC103871334 LOC100261403 LOC100245041 LOC7468554 LOC7463692 LOC11418702 LOC11439575 LOC107917829 LOC106428184 LOC106369310 LOC102612934 LOC102621664 LOC4348466 LOC4331920 LOC100384069 LOC100281447 LOC123113478 LOC123098425 LOC123425543 LOC123452466 LOC8054264 LOC8058364 LOC100837965 LOC100831355
Function* scarecrow-like protein 21 scarecrow-like protein 21 scarecrow-like protein 21 scarecrow-like protein 13 scarecrow-like protein 21 scarecrow-like transcription factor PAT1 scarecrow-like 5 SCARECROW-like 13 scarecrow-like protein 13 scarecrow-like transcription factor PAT1 scarecrow-like transcription factor PAT1 scarecrow-like protein 5 scarecrow-like transcription factor PAT1 scarecrow-like protein 21 scarecrow-like transcription factor PAT1 scarecrow-like protein 13 scarecrow-like transcription factor PAT1 scarecrow-like protein 13 scarecrow-like transcription factor PAT1 scarecrow-like transcription factor PAT1 scarecrow-like protein 5 scarecrow-like protein 21 scarecrow-like transcription factor PAT1 scarecrow-like transcription factor PAT1 scarecrow-like protein 21 uncharacterized LOC100384069 uncharacterized LOC100281447 scarecrow-like protein 21 scarecrow-like protein 21 chitin-inducible gibberellin-responsive protein 2-like scarecrow-like protein 21 scarecrow-like protein 21 chitin-inducible gibberellin-responsive protein 2 chitin-inducible gibberellin-responsive protein 2 scarecrow-like protein 21
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 4
nta04141 Protein processing in endoplasmic reticulum 2
nta00566 Sulfoquinovose metabolism 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
ath00230 Purine metabolism 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 3
ppo04517 IgSF CAM signaling 3
ppo04814 Motor proteins 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
tae04075 Plant hormone signal transduction 3
tae00620 Pyruvate metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00564 Glycerophospholipid metabolism 4
sbi00562 Inositol phosphate metabolism 2
sbi04075 Plant hormone signal transduction 2
sbi00561 Glycerolipid metabolism 2
sbi00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 3
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101260037 101253917 102591653 102590638 107797043 107827767 841482 827435 100817987 100796496 103837238 103871334 100261403 100245041 7468554 7463692 11418702 11439575 107917829 106428184 106369310 102612934 102621664 4348466 4331920 100384069 100281447 123113478 123098425 123425543 123452466 8054264 8058364 100837965 100831355
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