ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100037768	transcription factor MYB31
zma-r.6	100037768	transcription factor MYB31
zma-u.5	100384181	uncharacterized LOC100384181
zma-u.5	100384757	uncharacterized LOC100384757
zma-u.5	103643223	myb-related protein Zm38
sbi-r.1	110437489	myb-related protein 308-like
sbi-r.1	8072765	myb-related protein Zm38
osa-u.5	9272091	myb-related protein 308
osa-u.5	9266213	transcription factor MYB8
tae-r.2	123057014	myb-related protein 308
hvu-r.1	123446368	myb-related protein 308-like
hvu-r.1	123447943	transcription factor MYB8-like
hvu-r.1	123447336	anthocyanin regulatory C1 protein-like
bdi-r.1	100838163	myb-related protein 308
bdi-r.1	100842957	myb-related protein Zm38
ath-u.5	MYB4	myb domain protein 4
ath-u.5	MYB32	myb domain protein 32
sly-u.5	101263944	MYB-like transcription factor 4
sly-u.5	101255895	myb-related protein 330
sly-u.5	THM27	transcription factor
bra-r.6	103862384	transcription factor MYB32
bra-r.6	103832978	transcription factor MYB32
bra-r.6	103835174	transcription repressor MYB4
vvi-u.5	100261376	myb-related protein 308
ppo-u.5	7459789	myb-related protein 308
mtr-u.5	25500654	myb-related protein 308
ghi-r.1	107929869	transcription factor MYB123
ghi-r.1	107929886	transcription factor MYB123
ghi-r.1	107929892	transcription factor MYB123
bna-r.1	111214351	transcription factor MYB32
bna-r.1	106434709	transcription factor MYB32
bna-r.1	106428789	transcription factor MYB32
sot-r.1	102602711	myb-related protein 308-like
sot-r.1	102595353	myb-related protein 330-like
sot-r.1	102597030	myb-related protein 308-like
cit-r.1	102607674	myb-related protein 308
cit-r.1	102630891	myb-related protein 308-like
cit-r.1	102618316	transcription repressor MYB6-like
nta-r.1	107807778	MYB-like transcription factor 4
nta-r.1	107829396	MYB-like transcription factor 4
nta-r.1	107763565	myb-related protein 308-like
cre-r.1	CHLRE_02g108350v5	uncharacterized protein

Top 50 coexpressed genes to 100037768 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100037768 (zma-u.5 coexpression data)

CoexMap"100037768"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001105949.2 [sequence] [blastp]
XP_035820344.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 5, cyto_nucl 5	(predict for NP_001105949.2)
nucl 5, cyto 5, cyto_nucl 5	(predict for XP_035820344.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001105949.2)
other 8	(predict for XP_035820344.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100037768	zma-r.6 for 100037768	zma-u.5 for 100384181	zma-u.5 for 100384757	zma-u.5 for 103643223	sbi-r.1 for 110437489	sbi-r.1 for 8072765	osa-u.5 for 9272091	osa-u.5 for 9266213	tae-r.2 for 123057014	hvu-r.1 for 123446368	hvu-r.1 for 123447943	hvu-r.1 for 123447336	bdi-r.1 for 100838163	bdi-r.1 for 100842957	ath-u.5 for MYB4	ath-u.5 for MYB32	sly-u.5 for 101263944	sly-u.5 for 101255895	sly-u.5 for THM27	bra-r.6 for 103862384	bra-r.6 for 103832978	bra-r.6 for 103835174	vvi-u.5 for 100261376	ppo-u.5 for 7459789	mtr-u.5 for 25500654	ghi-r.1 for 107929869	ghi-r.1 for 107929886	ghi-r.1 for 107929892	bna-r.1 for 111214351	bna-r.1 for 106434709	bna-r.1 for 106428789	sot-r.1 for 102602711	sot-r.1 for 102595353	sot-r.1 for 102597030	cit-r.1 for 102607674	cit-r.1 for 102630891	cit-r.1 for 102618316	nta-r.1 for 107807778	nta-r.1 for 107829396	nta-r.1 for 107763565	cre-r.1 for CHLRE_02g108350v5

Ortholog

Ortholog ID: 148

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

MYB4

MYB6

MYB7

LOC100803345

MYBZ2

THM27

MYB4B

Function^*

myb-related protein Hv1

anthocyanin regulatory C1 protein-like

myb-related protein 308

myb-related protein Zm38

myb-related protein 308

transcription factor MYB8

myb-related protein Zm38

myb-related protein 308-like

anthocyanin regulatory C1 protein-like

myb-related protein 308-like

myb-related protein 308

myb-related protein Zm38

transcription factor MYB8

myb domain protein 4

myb domain protein 6

myb domain protein 7

MYB-like transcription factor 4

transcription factor MYBZ2

transcription factor

transcription factor MYB32

transcription repressor MYB4

transcription repressor MYB6

myb-related protein 308

R2R3 MYB 4b transcription factor

transcription factor MYB1

transcription repressor MYB6

myb-related protein 308

transcription factor MYB123

myb-related protein 308

transcription factor MYB123

transcription repressor MYB6-like

transcription factor MYB1

transcription factor MYB32

transcription repressor MYB4-like

transcription repressor MYB6-like

myb-related protein 330-like

transcription factor MYB3-like

myb-related protein 308

myb-related protein 330

MYB-like transcription factor 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	8
osa01230	Biosynthesis of amino acids	4
osa00360	Phenylalanine metabolism	3
osa00670	One carbon pool by folate	3
osa00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	5
tae00410	beta-Alanine metabolism	3
tae00770	Pantothenate and CoA biosynthesis	3
tae00760	Nicotinate and nicotinamide metabolism	2
tae01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00941	Flavonoid biosynthesis	4
hvu00940	Phenylpropanoid biosynthesis	3
hvu04712	Circadian rhythm - plant	3
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	4
hvu00360	Phenylalanine metabolism	4
hvu00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00670	One carbon pool by folate	2
bdi01230	Biosynthesis of amino acids	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	7
gma00943	Isoflavonoid biosynthesis	5
gma00480	Glutathione metabolism	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	5
sly00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	6
bra00941	Flavonoid biosynthesis	3
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
bra00360	Phenylalanine metabolism	2
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00941	Flavonoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo04145	Phagosome	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00941	Flavonoid biosynthesis	10
ppo04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4
ghi04145	Phagosome	4
ghi04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	8
ghi00520	Amino sugar and nucleotide sugar metabolism	5
ghi04016	MAPK signaling pathway - plant	5
ghi00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00460	Cyanoamino acid metabolism	5
bna00500	Starch and sucrose metabolism	5
bna00999	Biosynthesis of various plant secondary metabolites	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00941	Flavonoid biosynthesis	8
sot00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00630	Glyoxylate and dicarboxylate metabolism	3
cre01200	Carbon metabolism	3
cre00010	Glycolysis / Gluconeogenesis	2
cre00620	Pyruvate metabolism	2
cre00640	Propanoate metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

541744

541757

541754

8079894

9272091

9266213

100859947

123446368

123447336

123440451

100838163

100840448

100835967

830018

826530

816173

100803345

780553

544294

103862384

103835174

103858520

100261376

100245558

100254224

18106646

7497264

25499777

11442816

107929869

107912705

107929871

111214351

125594649

111197763

102595353

102578287

102607674

107814914

107812106

5725504

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Species	zma	sbi	osa	tae	hvu	bdi	ath	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	gma
Paralog	5	2	2	1	3	2	2	3	3	1	1	1	3	3	3	3	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100037768 (zma-u.5 coexpression data)

Top 50 enrichment test to 100037768 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**