ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	lox4	linoleate 9S-lipoxygenase4
zma-r.6	lox4	linoleate 9S-lipoxygenase4
zma-m.5	lox4	linoleate 9S-lipoxygenase4
zma-u.5	lox3	linoleate 9S-lipoxygenase3
zma-u.5	lox12	linoleate 9S-lipoxygenase12
zma-u.5	lox5	linoleate 9S-lipoxygenase5
osa-u.5	4333821	putative linoleate 9S-lipoxygenase 3
osa-u.5	4334049	linoleate 9S-lipoxygenase 2-like
osa-u.5	4333818	linoleate 9S-lipoxygenase 1-like
ath-u.5	LOX1	lipoxygenase 1
ath-u.5	LOX5	PLAT/LH2 domain-containing lipoxygenase family protein
gma-u.5	VLXB	lipoxygenase L-5
gma-u.5	100816880	linoleate 9S-lipoxygenase
gma-u.5	100815550	probable linoleate 9S-lipoxygenase 5
sly-u.5	LOXB	lipoxygenase
sly-u.5	101244618	probable linoleate 9S-lipoxygenase 5
vvi-u.5	LOX	lipoxygenase
vvi-u.5	100251097	probable linoleate 9S-lipoxygenase 5
vvi-u.5	100252850	probable linoleate 9S-lipoxygenase 5
ppo-u.5	18098782	probable linoleate 9S-lipoxygenase 5
mtr-u.5	11424967	linoleate 9S-lipoxygenase
mtr-u.5	11424965	linoleate 9S-lipoxygenase
mtr-u.5	11424953	linoleate 9S-lipoxygenase

Top 50 coexpressed genes to lox4 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to lox4 (zma-u.5 coexpression data)

CoexMap"100037803"

[Cytoscape]

Annotation

functional annotation

KEGG

zma00591 [list] [network] Linoleic acid metabolism (17 genes)

GO BP

GO:0034440 [list] [network] lipid oxidation

(53 genes)

IEA

GO CC

GO MF

GO:0016702 [list] [network] oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	(51 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(2153 genes)	IEA
GO:0005515 [list] [network] protein binding	(4389 genes)	IEA

Protein

NP_001105974.2 [sequence] [blastp]
XP_035816211.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 1, chlo 1, plas 1, cysk 1, cysk_plas 1	(predict for NP_001105974.2)
cyto 8, nucl 2	(predict for XP_035816211.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001105974.2)
other 9	(predict for XP_035816211.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for lox4	zma-r.6 for lox4	zma-m.5 for lox4	zma-u.5 for lox3	zma-u.5 for lox12	zma-u.5 for lox5	osa-u.5 for 4333821	osa-u.5 for 4334049	osa-u.5 for 4333818	ath-u.5 for LOX1	ath-u.5 for LOX5	gma-u.5 for VLXB	gma-u.5 for 100816880	gma-u.5 for 100815550	sly-u.5 for LOXB	sly-u.5 for 101244618	vvi-u.5 for LOX	vvi-u.5 for 100251097	vvi-u.5 for 100252850	ppo-u.5 for 18098782	mtr-u.5 for 11424967	mtr-u.5 for 11424965	mtr-u.5 for 11424953

Ortholog

Ortholog ID: 287

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

lox3

lox1

LOX5

LOX1

VLXC

LOX7

POTLX-3

Function^*

linoleate 9S-lipoxygenase3

linoleate 9S-lipoxygenase1

linoleate 9S-lipoxygenase 2

putative linoleate 9S-lipoxygenase 3

linoleate 9S-lipoxygenase 6

linoleate 9S-lipoxygenase 2

linoleate 9S-lipoxygenase 1

probable linoleate 9S-lipoxygenase 4

linoleate 9S-lipoxygenase 2

PLAT/LH2 domain-containing lipoxygenase family protein

lipoxygenase 1

lipoxygenase

probable linoleate 9S-lipoxygenase 5

linoleate 9S-lipoxygenase 5

linoleate 9S-lipoxygenase 1

probable linoleate 9S-lipoxygenase 5

seed linoleate 9S-lipoxygenase-2

linoleate 9S-lipoxygenase

probable linoleate 9S-lipoxygenase 4

probable linoleate 9S-lipoxygenase 5

linoleate 9S-lipoxygenase 5

linoleate 9S-lipoxygenase 6-like

lipoxygenase

probable linoleate 9S-lipoxygenase 5

linoleate 9S-lipoxygenase 6-like

putative linoleate 9S-lipoxygenase 5

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00591	Linoleic acid metabolism	3
zma00592	alpha-Linolenic acid metabolism	2
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00591	Linoleic acid metabolism	5
zma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00591	Linoleic acid metabolism	4
sbi00480	Glutathione metabolism	2
sbi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00591	Linoleic acid metabolism	4
sbi00460	Cyanoamino acid metabolism	2
sbi00592	alpha-Linolenic acid metabolism	2
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa01230	Biosynthesis of amino acids	3
osa00260	Glycine, serine and threonine metabolism	3
osa00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00591	Linoleic acid metabolism	9
tae00380	Tryptophan metabolism	3
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae00760	Nicotinate and nicotinamide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00591	Linoleic acid metabolism	9
tae00592	alpha-Linolenic acid metabolism	3
tae00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00280	Valine, leucine and isoleucine degradation	5
hvu00640	Propanoate metabolism	2
hvu00785	Lipoic acid metabolism	2
hvu01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	3
hvu01250	Biosynthesis of nucleotide sugars	3
hvu00230	Purine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00591	Linoleic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00591	Linoleic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00053	Ascorbate and aldarate metabolism	2
ath01240	Biosynthesis of cofactors	2
ath00460	Cyanoamino acid metabolism	2
ath00500	Starch and sucrose metabolism	2
ath00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3
sly01040	Biosynthesis of unsaturated fatty acids	2
sly01212	Fatty acid metabolism	2
sly02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00592	alpha-Linolenic acid metabolism	3
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00280	Valine, leucine and isoleucine degradation	5
bra01200	Carbon metabolism	5
bra00640	Propanoate metabolism	4
bra00410	beta-Alanine metabolism	4
bra01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00380	Tryptophan metabolism	2
vvi00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5
ppo00900	Terpenoid backbone biosynthesis	5
ppo00591	Linoleic acid metabolism	4
ppo00280	Valine, leucine and isoleucine degradation	2
ppo00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00591	Linoleic acid metabolism	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00591	Linoleic acid metabolism	2
ghi00592	alpha-Linolenic acid metabolism	2
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00591	Linoleic acid metabolism	5
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00591	Linoleic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00591	Linoleic acid metabolism	4
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00591	Linoleic acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00591	Linoleic acid metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00240	Pyrimidine metabolism	2
cit01232	Nucleotide metabolism	2
cit00740	Riboflavin metabolism	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	2
nta00900	Terpenoid backbone biosynthesis	2
nta00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00591	Linoleic acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

542495

541856

8056098

8078665

4350766

4338358

123113250

123113251

123447308

123447311

100831787

100833634

821808

841944

547856

547860

101256707

103869043

103844546

104879631

18098779

11431430

11435017

107954973

107894329

106388246

106433608

102602528

102577714

102621545

102621914

107761738

107830098

5716600

The preparation time of this page was 0.1 [sec].


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	6	3	2	3	2	3	1	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to lox4 (zma-u.5 coexpression data)

Top 50 enrichment test to lox4 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**