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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   TSB   tryptophan synthase beta subunit 
 gma-r.7   TSB   tryptophan synthase beta subunit 
 gma-m.5   TSB   tryptophan synthase beta subunit 
 gma-u.5   100801288   tryptophan synthase beta chain 1 
 gma-u.5   100792812   tryptophan synthase beta chain 1 
 mtr-u.5   11446449   tryptophan synthase beta chain 1 
 mtr-u.5   11446499   tryptophan synthase beta chain 1 
 mtr-u.5   11424595   tryptophan synthase beta chain 1 
 ppo-u.5   7485533   tryptophan synthase beta chain 1 
 ppo-u.5   7470939   tryptophan synthase beta chain 1 
 ppo-u.5   18095932   tryptophan synthase beta chain 1 
 ath-u.5   TSB2   tryptophan synthase beta-subunit 2 
 ath-u.5   TSB1   tryptophan synthase beta-subunit 1 
 ath-u.5   AT5G28237   Pyridoxal-5'-phosphate-dependent enzyme family protein 
 vvi-u.5   100250414   tryptophan synthase beta chain 1 
 vvi-u.5   100264166   tryptophan synthase beta chain 1 
 sly-u.5   101256422   tryptophan synthase beta chain 1-like 
 sly-u.5   101254921   tryptophan synthase beta chain 1-like 
 sly-u.5   101249965   tryptophan synthase beta chain 1-like 
 osa-u.5   4344612   tryptophan synthase beta chain 1 
 zma-u.5   732803   orange pericarp 2 
 zma-u.5   732842   orange pericarp 1 

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Top 50 coexpressed genes to TSB (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TSB (gma-u.5 coexpression data)

CoexMap"100170686"


gmaTSB | Entrez gene ID : 100170686      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 3 3 2 3 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00260 [list] [network] Glycine, serine and threonine metabolism (112 genes)
gmx00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (70 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (17 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0004834 [list] [network] tryptophan synthase activity  (6 genes)  IEA  
Protein NP_001237687.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 8,  chlo 1  (predict for NP_001237687.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_001237687.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
TSB

.
gma-r.7
for
TSB

.
gma-m.5
for
TSB

.
gma-u.5
for
100801288

.
gma-u.5
for
100792812

.
mtr-u.5
for
11446449

.
mtr-u.5
for
11446499

.
mtr-u.5
for
11424595

.
ppo-u.5
for
7485533

.
ppo-u.5
for
7470939

.
ppo-u.5
for
18095932

.
ath-u.5
for
TSB2

.
ath-u.5
for
TSB1

.
ath-u.5
for
AT5G28237

.
vvi-u.5
for
100250414

.
vvi-u.5
for
100264166

.
sly-u.5
for
101256422

.
sly-u.5
for
101254921

.
sly-u.5
for
101249965

.
osa-u.5
for
4344612

.
zma-u.5
for
732803

.
zma-u.5
for
732842

.


Ortholog ID: 2665
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sot sot cit cit bdi nta nta
Symbol TSB2 AT5G28237 LOC100801288 TSB LOC101254921 LOC101256529 LOC4344612 LOC732803 LOC732842 LOC103836224 LOC103836225 LOC100250414 LOC100264166 LOC18095932 LOC7470939 LOC11424595 LOC11446449 LOC123165289 LOC123157116 LOC123407462 LOC107919875 LOC107961973 LOC106390556 CHLRE_03g161400v5 LOC8067797 LOC102588810 LOC102578868 LOC102613151 LOC102630901 LOC100828003 LOC107808897 LOC107824047
Function* tryptophan synthase beta-subunit 2 Pyridoxal-5'-phosphate-dependent enzyme family protein tryptophan synthase beta chain 1 tryptophan synthase beta subunit tryptophan synthase beta chain 1-like tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 orange pericarp 2 orange pericarp 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1, chloroplastic uncharacterized protein tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1-like tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1 tryptophan synthase beta chain 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00966 Glucosinolate biosynthesis 5
ath00260 Glycine, serine and threonine metabolism 4
ath00380 Tryptophan metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
ath00904 Diterpenoid biosynthesis 2
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 4
gma00480 Glutathione metabolism 4
gma01230 Biosynthesis of amino acids 4
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 4
sly00620 Pyruvate metabolism 3
sly01200 Carbon metabolism 3
sly00061 Fatty acid biosynthesis 3
sly01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly01200 Carbon metabolism 4
sly01210 2-Oxocarboxylic acid metabolism 3
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
osa01230 Biosynthesis of amino acids 8
osa04075 Plant hormone signal transduction 3
osa00260 Glycine, serine and threonine metabolism 2
osa00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
zma00260 Glycine, serine and threonine metabolism 4
zma01210 2-Oxocarboxylic acid metabolism 3
zma00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 3
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
zma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00230 Purine metabolism 2
vvi03018 RNA degradation 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 5
ppo00020 Citrate cycle (TCA cycle) 3
ppo00270 Cysteine and methionine metabolism 3
ppo00566 Sulfoquinovose metabolism 3
ppo00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00460 Cyanoamino acid metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
tae01230 Biosynthesis of amino acids 12
tae00260 Glycine, serine and threonine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae01230 Biosynthesis of amino acids 13
tae00260 Glycine, serine and threonine metabolism 6
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 8
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00061 Fatty acid biosynthesis 4
ghi01040 Biosynthesis of unsaturated fatty acids 4
ghi01212 Fatty acid metabolism 4
ghi00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bna01230 Biosynthesis of amino acids 8
bna00260 Glycine, serine and threonine metabolism 6
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre00970 Aminoacyl-tRNA biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre00900 Terpenoid backbone biosynthesis 2
cre00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sbi01230 Biosynthesis of amino acids 7
sbi00260 Glycine, serine and threonine metabolism 2
sbi00902 Monoterpenoid biosynthesis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 8
sot00010 Glycolysis / Gluconeogenesis 4
sot00710 Carbon fixation by Calvin cycle 4
sot01200 Carbon metabolism 4
sot00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
sot00260 Glycine, serine and threonine metabolism 3
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sot01230 Biosynthesis of amino acids 3
sot00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 6
cit01200 Carbon metabolism 6
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit00260 Glycine, serine and threonine metabolism 3
cit00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit00940 Phenylpropanoid biosynthesis 2
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 9
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi00260 Glycine, serine and threonine metabolism 4
bdi00330 Arginine and proline metabolism 2
bdi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 3
nta00260 Glycine, serine and threonine metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
nta01230 Biosynthesis of amino acids 6
nta00010 Glycolysis / Gluconeogenesis 2
nta00071 Fatty acid degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828815 2746023 100801288 100170686 101254921 101256529 4344612 732803 732842 103836224 103836225 100250414 100264166 18095932 7470939 11424595 11446449 123165289 123157116 123407462 107919875 107961973 106390556 5729023 8067797 102588810 102578868 102613151 102630901 100828003 107808897 107824047
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