ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100191410	DNA-directed RNA polymerase II protein
zma-r.6	100191410	DNA-directed RNA polymerase II protein
zma-u.5	100274013	uncharacterized LOC100274013
sbi-r.1	8063498	uncharacterized LOC8063498
osa-u.5	4343968	uncharacterized LOC4343968
tae-r.2	123187879	uncharacterized LOC123187879
tae-r.2	123052014	uncharacterized LOC123052014
tae-r.2	123044135	uncharacterized LOC123044135
hvu-r.1	123425221	uncharacterized LOC123425221
bdi-r.1	100838267	uncharacterized LOC100838267
ath-u.5	AT4G08540	DNA-directed RNA polymerase II protein
ath-u.5	AT1G77890	DNA-directed RNA polymerase II protein
gma-u.5	100813297	uncharacterized LOC100813297
gma-u.5	100776426	uncharacterized LOC100776426
sly-u.5	101264619	uncharacterized LOC101264619
bra-r.6	103832217	uncharacterized LOC103832217
bra-r.6	103838796	uncharacterized LOC103838796
vvi-u.5	100260778	uncharacterized LOC100260778
ppo-u.5	7495127	uncharacterized LOC7495127
mtr-u.5	11431970	uncharacterized LOC11431970
ghi-r.1	107900954	uncharacterized LOC107900954
ghi-r.1	107951427	uncharacterized LOC107951427
ghi-r.1	121203103	uncharacterized LOC121203103
bna-r.1	106446929	uncharacterized LOC106446929
bna-r.1	106422154	uncharacterized LOC106422154
bna-r.1	BNAA07G33780D	uncharacterized BNAA07G33780D
sot-r.1	102590673	uncharacterized LOC102590673
cit-r.1	102626964	uncharacterized LOC102626964
nta-r.1	107819911	uncharacterized LOC107819911
nta-r.1	107784054	uncharacterized LOC107784054
nta-r.1	107782177	uncharacterized LOC107782177
cre-r.1	CHLRE_08g377600v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0035493 [list] [network] SNARE complex assembly

(5 genes)

IEA

GO CC

GO:0000323 [list] [network] lytic vacuole	(17 genes)	IEA
GO:0005768 [list] [network] endosome	(181 genes)	IEA

GO MF

GO:0000149 [list] [network] SNARE binding

(79 genes)

IEA

Protein

NP_001130316.1 [sequence] [blastp]
XP_008667029.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, nucl 1	(predict for NP_001130316.1)
chlo 6, nucl 1, mito 1	(predict for XP_008667029.1)

Subcellular
localization
TargetP

chlo 6	(predict for NP_001130316.1)
chlo 6	(predict for XP_008667029.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100191410	zma-r.6 for 100191410	zma-u.5 for 100274013	sbi-r.1 for 8063498	osa-u.5 for 4343968	tae-r.2 for 123187879	tae-r.2 for 123052014	tae-r.2 for 123044135	hvu-r.1 for 123425221	bdi-r.1 for 100838267	ath-u.5 for AT4G08540	ath-u.5 for AT1G77890	gma-u.5 for 100813297	gma-u.5 for 100776426	sly-u.5 for 101264619	bra-r.6 for 103832217	bra-r.6 for 103838796	vvi-u.5 for 100260778	ppo-u.5 for 7495127	mtr-u.5 for 11431970	ghi-r.1 for 107900954	ghi-r.1 for 107951427	ghi-r.1 for 121203103	bna-r.1 for 106446929	bna-r.1 for 106422154	bna-r.1 for BNAA07G33780D	sot-r.1 for 102590673	cit-r.1 for 102626964	nta-r.1 for 107819911	nta-r.1 for 107784054	nta-r.1 for 107782177	cre-r.1 for CHLRE_08g377600v5

Ortholog

Ortholog ID: 6031

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

DNA-directed RNA polymerase II protein

uncharacterized LOC100274013

uncharacterized LOC8063498

uncharacterized LOC4343968

uncharacterized LOC123187879

uncharacterized LOC123052014

uncharacterized LOC123044135

uncharacterized LOC123425221

uncharacterized LOC100838267

DNA-directed RNA polymerase II protein

uncharacterized LOC100813297

uncharacterized LOC100776426

uncharacterized LOC101264619

uncharacterized LOC103832217

uncharacterized LOC103838796

uncharacterized LOC100260778

uncharacterized LOC7495127

uncharacterized LOC11431970

uncharacterized LOC107900954

uncharacterized LOC107951427

uncharacterized LOC106446929

uncharacterized LOC106422154

uncharacterized BNAC06G38420D

uncharacterized LOC102590673

uncharacterized LOC102626964

uncharacterized LOC107819911

uncharacterized LOC107784054

uncharacterized LOC107782177

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	3
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	7
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	7
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	4
hvu04070	Phosphatidylinositol signaling system	3
hvu00562	Inositol phosphate metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	2
gma04144	Endocytosis	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	6
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

100191410

100274013

8063498

4343968

123187879

123052014

123044135

123425221

100838267

826413

844125

100813297

100776426

101264619

103832217

103838796

100260778

7495127

11431970

107900954

107951427

106446929

106422154

106354587

102590673

102626964

107819911

107784054

107782177

66054479

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100191410 (zma-u.5 coexpression data)

Top 50 enrichment test to 100191410 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	3	1	1	2	2	1	2	1	1	1	3	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100191410 (zma-u.5 coexpression data)

Top 50 enrichment test to 100191410 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**