ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100193694	uncharacterized LOC100193694
zma-r.6	100193694	uncharacterized LOC100193694
zma-m.5	100193694	uncharacterized LOC100193694
zma-u.5	100191991	serine/threonine protein phosphatase regulatory subunit Bbeta isoform
zma-u.5	100191387	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
zma-u.5	100383125	uncharacterized LOC100383125
sbi-r.1	8082494	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sbi-r.1	8061986	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sbi-r.1	110434866	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	4328769	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	4341313	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	9270873	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
tae-r.2	123061413	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
tae-r.2	123070058	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
tae-r.2	123078512	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
hvu-r.1	123406345	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
hvu-r.1	123407426	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
hvu-r.1	123443830	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bdi-r.1	100835234	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bdi-r.1	100837992	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bdi-r.1	100839377	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ath-u.5	ATB BETA	Protein phosphatase 2A, regulatory subunit PR55
ath-u.5	B ALPHA	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
gma-u.5	100789058	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
gma-u.5	100790801	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
gma-u.5	100795137	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101251957	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101256096	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101246329	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bra-r.6	103835944	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bra-r.6	103832831	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bra-r.6	103871268	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100266437	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100265267	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100257641	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	18094825	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	7457753	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	18096730	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	11425778	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	11419844	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	25500415	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ghi-r.1	107897394	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ghi-r.1	107895343	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ghi-r.1	107891721	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bna-r.1	125609510	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bna-r.1	106346851	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
bna-r.1	106349659	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sot-r.1	102584203	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sot-r.1	102586381	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sot-r.1	102591223	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
cit-r.1	102608811	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
cit-r.1	102617320	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
cit-r.1	102628048	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
nta-r.1	107777781	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
nta-r.1	107776791	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
nta-r.1	107770163	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
cre-r.1	CHLRE_01g055420v5	uncharacterized protein

Top 50 coexpressed genes to 100193694 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100193694 (zma-u.5 coexpression data)

CoexMap"100193694"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03015 [list] [network] mRNA surveillance pathway (165 genes)

zma04382 [list] [network] Cornified envelope formation (53 genes)

GO BP

GO CC

GO:0000159 [list] [network] protein phosphatase type 2A complex

(29 genes)

IEA

GO MF

GO:0019888 [list] [network] protein phosphatase regulator activity	(63 genes)	IEA
GO:0005515 [list] [network] protein binding	(4389 genes)	IEA

Protein

NP_001345792.1 [sequence] [blastp]
XP_008676585.1 [sequence] [blastp]
XP_008676586.1 [sequence] [blastp]
XP_023157922.1 [sequence] [blastp]
XP_023157923.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, pero 1	(predict for NP_001345792.1)
plas 5, golg_plas 4, golg 2, E.R. 1	(predict for XP_008676585.1)
nucl 6, cyto 2, pero 1	(predict for XP_008676586.1)
plas 5, golg_plas 4, golg 2, E.R. 1	(predict for XP_023157922.1)
plas 5, golg_plas 4, golg 2, E.R. 1	(predict for XP_023157923.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001345792.1)
scret 9	(predict for XP_008676585.1)
other 7	(predict for XP_008676586.1)
scret 9	(predict for XP_023157922.1)
scret 9	(predict for XP_023157923.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100193694	zma-r.6 for 100193694	zma-m.5 for 100193694	zma-u.5 for 100191991	zma-u.5 for 100191387	zma-u.5 for 100383125	sbi-r.1 for 8082494	sbi-r.1 for 8061986	sbi-r.1 for 110434866	osa-u.5 for 4328769	osa-u.5 for 4341313	osa-u.5 for 9270873	tae-r.2 for 123061413	tae-r.2 for 123070058	tae-r.2 for 123078512	hvu-r.1 for 123406345	hvu-r.1 for 123407426	hvu-r.1 for 123443830	bdi-r.1 for 100835234	bdi-r.1 for 100837992	bdi-r.1 for 100839377	ath-u.5 for ATB BETA	ath-u.5 for B ALPHA	gma-u.5 for 100789058	gma-u.5 for 100790801	gma-u.5 for 100795137	sly-u.5 for 101251957	sly-u.5 for 101256096	sly-u.5 for 101246329	bra-r.6 for 103835944	bra-r.6 for 103832831	bra-r.6 for 103871268	vvi-u.5 for 100266437	vvi-u.5 for 100265267	vvi-u.5 for 100257641	ppo-u.5 for 18094825	ppo-u.5 for 7457753	ppo-u.5 for 18096730	mtr-u.5 for 11425778	mtr-u.5 for 11419844	mtr-u.5 for 25500415	ghi-r.1 for 107897394	ghi-r.1 for 107895343	ghi-r.1 for 107891721	bna-r.1 for 125609510	bna-r.1 for 106346851	bna-r.1 for 106349659	sot-r.1 for 102584203	sot-r.1 for 102586381	sot-r.1 for 102591223	cit-r.1 for 102608811	cit-r.1 for 102617320	cit-r.1 for 102628048	nta-r.1 for 107777781	nta-r.1 for 107776791	nta-r.1 for 107770163	cre-r.1 for CHLRE_01g055420v5

Ortholog

Ortholog ID: 1027

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

B ALPHA

Function^*

uncharacterized LOC100193694

Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

uncharacterized LOC100383125

serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

Protein phosphatase 2A, regulatory subunit PR55

protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform

serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2
sbi04382	Cornified envelope formation	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04142	Lysosome	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa04382	Cornified envelope formation	3
osa04144	Endocytosis	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	3
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae00562	Inositol phosphate metabolism	2
tae04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae04382	Cornified envelope formation	5
tae03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04382	Cornified envelope formation	3
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	4
hvu03040	Spliceosome	3
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03060	Protein export	2
bdi00510	N-Glycan biosynthesis	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath04120	Ubiquitin mediated proteolysis	2
ath00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	7
gma04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	3
gma04382	Cornified envelope formation	3
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	5
sly04382	Cornified envelope formation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04382	Cornified envelope formation	4
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra04382	Cornified envelope formation	3
bra03250	Viral life cycle - HIV-1	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	2
mtr03022	Basal transcription factors	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03015	mRNA surveillance pathway	3
mtr03040	Spliceosome	2
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	8
ghi04382	Cornified envelope formation	8
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	3
ghi04382	Cornified envelope formation	3
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	9
ghi04382	Cornified envelope formation	8
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	7
bna04382	Cornified envelope formation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04382	Cornified envelope formation	9
bna03015	mRNA surveillance pathway	6
bna00600	Sphingolipid metabolism	3
bna00040	Pentose and glucuronate interconversions	2
bna00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04382	Cornified envelope formation	8
bna03015	mRNA surveillance pathway	6
bna00600	Sphingolipid metabolism	2
bna04144	Endocytosis	2
bna04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	4
sot04141	Protein processing in endoplasmic reticulum	3
sot03015	mRNA surveillance pathway	3
sot04382	Cornified envelope formation	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	6
sot04382	Cornified envelope formation	6
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03015	mRNA surveillance pathway	2
cit04382	Cornified envelope formation	2
cit00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta00020	Citrate cycle (TCA cycle)	2
nta00480	Glutathione metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6
nta03022	Basal transcription factors	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	4
cre00190	Oxidative phosphorylation	3
cre04382	Cornified envelope formation	3

Expression

Expression pattern

Entrez Gene ID^*

100193694

100191387

100383125

8082494

8061986

110434866

4328769

4341313

9270873

123070058

123144474

123156267

123406345

123407426

123443830

100835234

100837992

100839377

838348

841594

100789058

100790801

100795137

101251957

101256096

101246329

103835944

103871268

103872554

100265267

100257641

100243351

18096730

7462265

7463742

11425778

11419844

25500415

107897394

107895343

107891721

125609510

106358582

106427161

102584203

102586381

102582933

102608811

102617320

102628048

107776791

107795494

107788567

5725732

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100193694 (zma-u.5 coexpression data)

Top 50 enrichment test to 100193694 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**