ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100194361	uncharacterized LOC100194361
zma-r.6	100194361	uncharacterized LOC100194361
zma-m.5	100194361	uncharacterized LOC100194361
osa-u.5	4325074	sm-like protein LSM3A
ath-u.5	LSM3A	Small nuclear ribonucleoprotein family protein
ath-u.5	LSM3B	Small nuclear ribonucleoprotein family protein
gma-u.5	100306547	uncharacterized LOC100306547
gma-u.5	100499782	uncharacterized LOC100499782
sly-u.5	101264277	sm-like protein LSM3A
vvi-u.5	100253870	sm-like protein LSM3B
ppo-u.5	7467821	sm-like protein LSM3B
ppo-u.5	7469218	sm-like protein LSM3B
mtr-u.5	11446185	sm-like protein LSM3A

functional annotation

KEGG

zma03018 [list] [network] RNA degradation (140 genes)

zma03040 [list] [network] Spliceosome (506 genes)

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(175 genes)

IEA

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1549 genes)

IEA

Protein

NP_001132868.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, extr 1, chlo 1, E.R. 1, cysk 1

(predict for NP_001132868.2)

Subcellular
localization
TargetP

other 7

(predict for NP_001132868.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100194361	zma-r.6 for 100194361	zma-m.5 for 100194361	osa-u.5 for 4325074	ath-u.5 for LSM3A	ath-u.5 for LSM3B	gma-u.5 for 100306547	gma-u.5 for 100499782	sly-u.5 for 101264277	vvi-u.5 for 100253870	ppo-u.5 for 7467821	ppo-u.5 for 7469218	mtr-u.5 for 11446185

Ortholog ID: 4465

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

LSM3A

LSM3B

Function^*

uncharacterized LOC100194361

sm-like protein LSM3B

sm-like protein LSM3A

sm-like protein LSM3B

sm-like protein LSM3A

sm-like protein LSM3B

Small nuclear ribonucleoprotein family protein

uncharacterized LOC100499782

uncharacterized LOC100306547

sm-like protein LSM3A

sm-like protein LSM3B

sm-like protein LSM3A

sm-like protein LSM3B

sm-like protein LSM3A

sm-like protein LSM3B

sm-like protein LSM3A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7
zma03018	RNA degradation	4
zma03008	Ribosome biogenesis in eukaryotes	2
zma03020	RNA polymerase	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	8
sbi03010	Ribosome	5
sbi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6
osa03040	Spliceosome	6
osa03013	Nucleocytoplasmic transport	3
osa03015	mRNA surveillance pathway	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	9
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	8
tae03040	Spliceosome	8
tae03020	RNA polymerase	4
tae03420	Nucleotide excision repair	4
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	5
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03050	Proteasome	3
bdi03010	Ribosome	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03018	RNA degradation	2
ath03020	RNA polymerase	2
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	7
ath03018	RNA degradation	3
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03050	Proteasome	3
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma03040	Spliceosome	4
gma03018	RNA degradation	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra00190	Oxidative phosphorylation	2
bra03018	RNA degradation	2
bra03010	Ribosome	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03018	RNA degradation	4
ppo03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo00190	Oxidative phosphorylation	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	14
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna03018	RNA degradation	6
bna03020	RNA polymerase	4
bna03420	Nucleotide excision repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta03040	Spliceosome	6
nta03018	RNA degradation	4
nta03020	RNA polymerase	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10
nta03040	Spliceosome	6
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	9
cre03018	RNA degradation	2
cre03013	Nucleocytoplasmic transport	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

100194361

8060974

4325074

123057691

123071535

123444803

123446676

100822834

838714

844021

100499782

100306547

101264277

103830597

103832139

100253870

7467821

7469218

11446185

107932177

121217861

106376728

106353502

102597966

102612141

107815981

107822166

5723508

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100194361 (zma-u.5 coexpression data)

Top 50 enrichment test to 100194361 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	2	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100194361 (zma-u.5 coexpression data)

Top 50 enrichment test to 100194361 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**