ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100233131	dnaJ protein homolog
vvi-r.5	100233131	dnaJ protein homolog
vvi-m.5	100233131	dnaJ protein homolog
vvi-u.5	100251979	dnaJ protein homolog-like
vvi-u.5	100242705	dnaJ protein homolog 2
ath-u.5	J3	DNAJ homologue 3
ath-u.5	J2	DNAJ homologue 2
gma-u.5	PM37	seed maturation protein PM37
gma-u.5	100778677	dnaJ protein homolog
gma-u.5	100808604	chaperone protein dnaJ
ppo-u.5	7483814	dnaJ protein homolog 2
ppo-u.5	7490890	dnaJ protein homolog
ppo-u.5	7491603	dnaJ protein homolog
mtr-u.5	11444505	dnaJ protein homolog
mtr-u.5	11436580	chaperone protein dnaJ 3
mtr-u.5	11414402	dnaJ protein homolog 2
sly-u.5	101252869	dnaJ protein homolog
sly-u.5	101258610	dnaJ protein homolog
sly-u.5	101259708	dnaJ protein homolog
osa-u.5	4336584	chaperone protein dnaJ A6-like
osa-u.5	4333580	dnaJ protein homolog
osa-u.5	4334359	dnaJ protein homolog
zma-u.5	100216704	putative dnaJ chaperone family protein
zma-u.5	100382437	putative dnaJ chaperone family protein
zma-u.5	100283585	dnaJ protein

Top 50 coexpressed genes to 100233131 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100233131 (vvi-u.5 coexpression data)

CoexMap"100233131"

[Cytoscape]

Annotation

functional annotation

KEGG

vvi04141 [list] [network] Protein processing in endoplasmic reticulum (206 genes)

GO BP

GO:0042026 [list] [network] protein refolding	(34 genes)	IEA
GO:0009408 [list] [network] response to heat	(67 genes)	IEA

GO CC

GO:0005829 [list] [network] cytosol	(779 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4496 genes)	IEA

GO MF

GO:0030544 [list] [network] Hsp70 protein binding	(11 genes)	IEA
GO:0051082 [list] [network] unfolded protein binding	(126 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2120 genes)	IEA

Protein

XP_002263156.1 [sequence] [blastp]
XP_010658892.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, plas 1, mito 1, extr 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for XP_002263156.1)
nucl 7, plas 1, mito 1, extr 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for XP_010658892.1)

Subcellular
localization
TargetP

other 8	(predict for XP_002263156.1)
other 8	(predict for XP_010658892.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100233131	vvi-r.5 for 100233131	vvi-m.5 for 100233131	vvi-u.5 for 100251979	vvi-u.5 for 100242705	ath-u.5 for J3	ath-u.5 for J2	gma-u.5 for PM37	gma-u.5 for 100778677	gma-u.5 for 100808604	ppo-u.5 for 7483814	ppo-u.5 for 7490890	ppo-u.5 for 7491603	mtr-u.5 for 11444505	mtr-u.5 for 11436580	mtr-u.5 for 11414402	sly-u.5 for 101252869	sly-u.5 for 101258610	sly-u.5 for 101259708	osa-u.5 for 4336584	osa-u.5 for 4333580	osa-u.5 for 4334359	zma-u.5 for 100216704	zma-u.5 for 100382437	zma-u.5 for 100283585

Ortholog

Ortholog ID: 1018

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

dnaJ protein homolog 2

dnaJ protein homolog-like

DNAJ homologue 2

DNAJ homologue 3

dnaJ protein homolog 1

chaperone protein dnaJ

chaperone protein dnaJ 3

dnaJ protein homolog

chaperone protein dnaJ 3

dnaJ protein homolog

chaperone protein dnaJ 3-like

chaperone protein dnaJ 3

dnaJ protein homolog

dnaJ protein homolog ANJ1

dnaJ protein homolog

DnaJ-like protein

dnaJ protein homolog

putative dnaJ chaperone family protein

chaperone DNA J2

dnaJ protein homolog 2

chaperone protein dnaJ A6

dnaJ protein homolog

dnaJ protein homolog 2-like

dnaJ protein homolog

dnaJ protein homolog 2

dnaJ protein homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	8
vvi03040	Spliceosome	3
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	8
ath04626	Plant-pathogen interaction	4
ath03040	Spliceosome	3
ath04144	Endocytosis	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	8
ath04626	Plant-pathogen interaction	4
ath03040	Spliceosome	3
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	7
gma03040	Spliceosome	3
gma04144	Endocytosis	3
gma04120	Ubiquitin mediated proteolysis	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	6
bra04120	Ubiquitin mediated proteolysis	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr04120	Ubiquitin mediated proteolysis	2
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	6
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi00195	Photosynthesis	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit03083	Polycomb repressive complex	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	6
cit03040	Spliceosome	3
cit04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	9
sly03040	Spliceosome	5
sly04144	Endocytosis	4
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	2
sly04120	Ubiquitin mediated proteolysis	2
sly00290	Valine, leucine and isoleucine biosynthesis	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot04141	Protein processing in endoplasmic reticulum	5
sot04144	Endocytosis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	8
osa03040	Spliceosome	3
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5
zma04141	Protein processing in endoplasmic reticulum	4
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	5
hvu03040	Spliceosome	3
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	7
bdi03040	Spliceosome	4
bdi04144	Endocytosis	4
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	5
cre03040	Spliceosome	2
cre04144	Endocytosis	2
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

100242705

100251979

832267

823531

100800590

100818805

103856495

103851419

7491603

7491125

11444505

11436580

107904773

107954227

125596954

106419752

102608938

102627308

101252869

101258610

102577512

102592889

107793424

107829343

4333580

4334359

100216704

100191411

123122708

123145046

123452599

123452093

110430211

8083362

100844844

100822367

5717292

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Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100233131 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100233131 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**