Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100244848   RNA polymerase sigma factor sigD, chloroplastic 
 vvi-r.5   100244848   RNA polymerase sigma factor sigD, chloroplastic 
 ath-u.5   SIG4   sigma factor 4 
 bra-r.6   103850892   RNA polymerase sigma factor sigD, chloroplastic 
 bra-r.6   103846548   RNA polymerase sigma factor sigD, chloroplastic 
 ppo-u.5   18102037   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   120579652   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   11409298   RNA polymerase sigma factor sigD, chloroplastic 
 bna-r.1   125574912   RNA polymerase sigma factor sigD, chloroplastic-like 
 bna-r.1   106417562   RNA polymerase sigma factor sigD, chloroplastic-like 
 bna-r.1   106384365   RNA polymerase sigma factor sigD, chloroplastic 
 cit-r.1   102630560   RNA polymerase sigma factor sigD, chloroplastic 
 sly-u.5   101266372   RNA polymerase sigma factor sigD, chloroplastic 
 sot-r.1   102579944   RNA polymerase sigma factor sigD, chloroplastic 
 nta-r.1   107792030   RNA polymerase sigma factor sigD, chloroplastic 
 nta-r.1   107830369   RNA polymerase sigma factor sigD, chloroplastic 

close


Top 50 coexpressed genes to 100244848 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 100244848 (vvi-u.5 coexpression data)

CoexMap"100244848"


vviLOC100244848 | Entrez gene ID : 100244848    
Species vvi ath bra ppo mtr bna cit sly sot nta sbi osa gma tae hvu ghi zma cre bdi
Paralog 2 1 2 1 2 3 1 1 1 2 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (57 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1359 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (925 genes)  IEA  
Protein XP_002272444.2 [sequence] [blastp]
XP_019079852.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  chlo 2,  extr 2,  E.R._plas 2  (predict for XP_002272444.2)
E.R. 4,  chlo 2,  extr 2,  E.R._plas 2  (predict for XP_019079852.1)
Subcellular
localization
TargetP
other 4  (predict for XP_002272444.2)
other 4  (predict for XP_019079852.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100244848
vvi-r.5
for
100244848
ath-u.5
for
SIG4
bra-r.6
for
103850892
bra-r.6
for
103846548
ppo-u.5
for
18102037
mtr-u.5
for
120579652
mtr-u.5
for
11409298
bna-r.1
for
125574912
bna-r.1
for
106417562
bna-r.1
for
106384365
cit-r.1
for
102630560
sly-u.5
for
101266372
sot-r.1
for
102579944
nta-r.1
for
107792030
nta-r.1
for
107830369


Ortholog ID: 13192
Species vvi ath bra bra ppo mtr mtr bna bna bna cit sly sot nta nta
Symbol LOC100244848 SIG4 LOC103850892 LOC103846548 LOC18102037 LOC120579652 LOC11409298 LOC125574912 LOC106417562 LOC106372272 LOC102630560 LOC101266372 LOC102579944 LOC107792030 LOC107830369
Function* RNA polymerase sigma factor sigD, chloroplastic sigma factor 4 RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100244848 831218 103850892 103846548 18102037 120579652 11409298 125574912 106417562 106372272 102630560 101266372 102579944 107792030 107830369
The preparation time of this page was 0.1 [sec].