ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100249768	uncharacterized LOC100249768
vvi-r.5	100249768	uncharacterized LOC100249768
vvi-m.5	100249768	uncharacterized LOC100249768
vvi-u.5	100250806	uncharacterized LOC100250806
vvi-u.5	100257727	uncharacterized LOC100257727
vvi-u.5	100250127	uncharacterized LOC100250127
ath-u.5	AT3G26990	ENTH/VHS family protein
ath-u.5	AT5G10060	ENTH/VHS family protein
ath-u.5	AT5G65180	ENTH/VHS family protein
gma-u.5	100815709	uncharacterized LOC100815709
gma-u.5	100808335	regulation of nuclear pre-mRNA domain-containing protein 1A
gma-u.5	100806108	regulation of nuclear pre-mRNA domain-containing protein 1A
bra-r.6	103850345	regulation of nuclear pre-mRNA domain-containing protein 1A
bra-r.6	103875259	regulation of nuclear pre-mRNA domain-containing protein 1A
bra-r.6	103855848	regulation of nuclear pre-mRNA domain-containing protein 1A
ppo-u.5	7456257	UPF0400 protein C337.03
ppo-u.5	18100965	uncharacterized LOC18100965
ppo-u.5	7477107	uncharacterized LOC7477107
mtr-u.5	11422191	regulation of nuclear pre-mRNA domain-containing protein 1B
mtr-u.5	11427699	regulation of nuclear pre-mRNA domain-containing protein 1A
mtr-u.5	11442951	regulation of nuclear pre-mRNA domain-containing protein 1A
ghi-r.1	107890033	regulation of nuclear pre-mRNA domain-containing protein 1B
ghi-r.1	107913676	regulation of nuclear pre-mRNA domain-containing protein 1B
ghi-r.1	107948370	regulation of nuclear pre-mRNA domain-containing protein 1B
bna-r.1	106384910	regulation of nuclear pre-mRNA domain-containing protein 1A-like
bna-r.1	106430442	regulation of nuclear pre-mRNA domain-containing protein 1A-like
bna-r.1	106349302	regulation of nuclear pre-mRNA domain-containing protein 1A-like
cit-r.1	102628356	uncharacterized LOC102628356
cit-r.1	102614365	uncharacterized LOC102614365
cit-r.1	102630810	uncharacterized LOC102630810
sly-u.5	101266382	uncharacterized LOC101266382
sly-u.5	101245837	uncharacterized LOC101245837
sly-u.5	101261976	uncharacterized LOC101261976
sot-r.1	102585278	regulation of nuclear pre-mRNA domain-containing protein 1B-like
sot-r.1	102584323	uncharacterized LOC102584323
sot-r.1	102580771	regulation of nuclear pre-mRNA domain-containing protein 1B
nta-r.1	107765362	uncharacterized LOC107765362
nta-r.1	107795626	uncharacterized LOC107795626
nta-r.1	107816383	uncharacterized LOC107816383
osa-u.5	4351389	UPF0400 protein C337.03
osa-u.5	4349670	uncharacterized LOC4349670
osa-u.5	4337145	uncharacterized LOC4337145
zma-u.5	103651671	regulation of nuclear pre-mRNA domain-containing protein 1B-like
zma-u.5	100278822	uncharacterized LOC100278822
zma-u.5	100275719	uncharacterized LOC100275719
tae-r.2	123120431	regulation of nuclear pre-mRNA domain-containing protein 2
tae-r.2	123072058	arp2/3 complex-activating protein rickA
tae-r.2	123063154	ENHANCER OF AG-4 protein 2
hvu-r.1	123445280	UPF0400 protein C337.03-like
hvu-r.1	123448218	regulation of nuclear pre-mRNA domain-containing protein 2-like
hvu-r.1	123452771	protein enabled homolog
sbi-r.1	8068447	regulation of nuclear pre-mRNA domain-containing protein 1A
sbi-r.1	8083053	actin cytoskeleton-regulatory complex protein PAN1
sbi-r.1	8070377	splicing factor 1
bdi-r.1	100829173	regulation of nuclear pre-mRNA domain-containing protein 1B
bdi-r.1	100837105	regulation of nuclear pre-mRNA domain-containing protein 1A
bdi-r.1	100837117	UPF0400 protein C337.03
cre-r.1	CHLRE_11g481900v5	uncharacterized protein

Top 50 coexpressed genes to 100249768 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100249768 (vvi-u.5 coexpression data)

CoexMap"100249768"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031124 [list] [network] mRNA 3'-end processing

(14 genes)

IEA

GO CC

GO:0016591 [list] [network] RNA polymerase II, holoenzyme

(63 genes)

IEA

GO MF

GO:0000993 [list] [network] RNA polymerase II complex binding

(16 genes)

IEA

Protein

XP_010660722.1 [sequence] [blastp]
XP_010660723.1 [sequence] [blastp]
XP_019080869.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, extr 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for XP_010660722.1)
nucl 4, chlo 3, extr 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for XP_010660723.1)
nucl 4, chlo 3, extr 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for XP_019080869.1)

Subcellular
localization
TargetP

scret 3, chlo 3	(predict for XP_010660722.1)
scret 3, chlo 3	(predict for XP_010660723.1)
scret 3, chlo 3	(predict for XP_019080869.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100249768	vvi-r.5 for 100249768	vvi-m.5 for 100249768	vvi-u.5 for 100250806	vvi-u.5 for 100257727	vvi-u.5 for 100250127	ath-u.5 for AT3G26990	ath-u.5 for AT5G10060	ath-u.5 for AT5G65180	gma-u.5 for 100815709	gma-u.5 for 100808335	gma-u.5 for 100806108	bra-r.6 for 103850345	bra-r.6 for 103875259	bra-r.6 for 103855848	ppo-u.5 for 7456257	ppo-u.5 for 18100965	ppo-u.5 for 7477107	mtr-u.5 for 11422191	mtr-u.5 for 11427699	mtr-u.5 for 11442951	ghi-r.1 for 107890033	ghi-r.1 for 107913676	ghi-r.1 for 107948370	bna-r.1 for 106384910	bna-r.1 for 106430442	bna-r.1 for 106349302	cit-r.1 for 102628356	cit-r.1 for 102614365	cit-r.1 for 102630810	sly-u.5 for 101266382	sly-u.5 for 101245837	sly-u.5 for 101261976	sot-r.1 for 102585278	sot-r.1 for 102584323	sot-r.1 for 102580771	nta-r.1 for 107765362	nta-r.1 for 107795626	nta-r.1 for 107816383	osa-u.5 for 4351389	osa-u.5 for 4349670	osa-u.5 for 4337145	zma-u.5 for 103651671	zma-u.5 for 100278822	zma-u.5 for 100275719	tae-r.2 for 123120431	tae-r.2 for 123072058	tae-r.2 for 123063154	hvu-r.1 for 123445280	hvu-r.1 for 123448218	hvu-r.1 for 123452771	sbi-r.1 for 8068447	sbi-r.1 for 8083053	sbi-r.1 for 8070377	bdi-r.1 for 100829173	bdi-r.1 for 100837105	bdi-r.1 for 100837117	cre-r.1 for CHLRE_11g481900v5

Ortholog

Ortholog ID: 1017

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100249768

uncharacterized LOC100250806

uncharacterized LOC100250127

ENTH/VHS family protein

uncharacterized LOC100815709

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1B

UPF0400 protein C337.03

uncharacterized LOC7477107

uncharacterized LOC7477109

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 2

regulation of nuclear pre-mRNA domain-containing protein 1A-like

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1A-like

uncharacterized LOC102628356

uncharacterized LOC102614365

uncharacterized LOC102630810

uncharacterized LOC101266382

uncharacterized LOC101245837

uncharacterized LOC101261976

regulation of nuclear pre-mRNA domain-containing protein 1B-like

uncharacterized LOC102584323

regulation of nuclear pre-mRNA domain-containing protein 1B

uncharacterized LOC107765362

uncharacterized LOC107825766

uncharacterized LOC107787582

UPF0400 protein C337.03

uncharacterized LOC4349670

uncharacterized LOC4327230

uncharacterized LOC100278822

uncharacterized LOC100275719

zinc finger homeobox protein 4

regulation of nuclear pre-mRNA domain-containing protein 2

arp2/3 complex-activating protein rickA

regulation of nuclear pre-mRNA domain-containing protein 1A

UPF0400 protein C337.03-like

protein enabled homolog

regulation of nuclear pre-mRNA domain-containing protein 1A-like

regulation of nuclear pre-mRNA domain-containing protein 1A

actin cytoskeleton-regulatory complex protein PAN1

splicing factor 1

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

proline-rich protein 36

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03018	RNA degradation	3
bra04120	Ubiquitin mediated proteolysis	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6
bra03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00310	Lysine degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa03250	Viral life cycle - HIV-1	3
osa03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7
cre03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

100249768

100250806

100250127

822316

830870

836642

100815709

100802429

100800067

103850345

103875259

103836971

7456257

7477107

7477109

11427699

11442951

11435944

107890033

107948370

107897970

106384910

106376974

125593982

102628356

102614365

102630810

101266382

101245837

101261976

102585278

102584323

102580771

107765362

107825766

107787582

4351389

4349670

4327230

100278822

100275719

100384037

123120431

123072058

123119886

123445280

123452771

123395218

8068447

8083053

8070377

100829173

100837105

100845741

66055366

The preparation time of this page was 0.2 [sec].


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100249768 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100249768 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**