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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100258040   uncharacterized LOC100258040 
 vvi-r.5   100258040   uncharacterized LOC100258040 
 ath-u.5   AT4G10130   DNAJ heat shock N-terminal domain-containing protein 
 gma-u.5   100814856   DPH4 homolog 
 bra-r.6   103838901   DPH4 homolog 
 ppo-u.5   18104917   uncharacterized LOC18104917 
 mtr-u.5   11439195   DPH4 homolog 
 mtr-u.5   25488486   DPH4 homolog 
 ghi-r.1   121219827   DPH4 homolog 
 ghi-r.1   107910740   DPH4 homolog 
 bna-r.1   106443961   DPH4 homolog 
 bna-r.1   106359691   DPH4 homolog 
 sot-r.1   102603682   DPH4 homolog 
 nta-r.1   107830568   uncharacterized LOC107830568 
 nta-r.1   107804450   uncharacterized LOC107804450 
 osa-u.5   4345818   uncharacterized LOC4345818 
 osa-u.5   4347281   DPH4 homolog 
 zma-u.5   100274479   uncharacterized LOC100274479 
 zma-u.5   112529890   uncharacterized LOC112529890 
 tae-r.2   123112226   DPH4 homolog 
 tae-r.2   123103985   DPH4 homolog 
 tae-r.2   123121744   DPH4 homolog 
 hvu-r.1   123398738   DPH4 homolog 
 sbi-r.1   8078027   DPH4 homolog 
 sbi-r.1   8063709   DPH4 homolog 
 bdi-r.1   100834032   DPH4 homolog 

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Top 50 coexpressed genes to 100258040 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100258040 (vvi-u.5 coexpression data)

CoexMap"100258040"


vviLOC100258040 | Entrez gene ID : 100258040      
Species vvi ath gma bra ppo mtr ghi bna sot nta osa zma tae hvu sbi bdi cre cit sly
Paralog 2 1 1 1 1 2 2 2 1 2 2 2 3 1 2 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0017183 [list] [network] protein histidyl modification to diphthamide  (8 genes)  IEA  
GO:0002098 [list] [network] tRNA wobble uridine modification  (16 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (779 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0046872 [list] [network] metal ion binding  (2138 genes)  IEA  
Protein XP_002283441.1 [sequence] [blastp]
XP_059592852.1 [sequence] [blastp]
XP_059592853.1 [sequence] [blastp]
XP_059592854.1 [sequence] [blastp]
XP_059592855.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  nucl_plas 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1  (predict for XP_002283441.1)
nucl 4,  chlo 4,  nucl_plas 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1  (predict for XP_059592852.1)
nucl 4,  chlo 4,  nucl_plas 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1  (predict for XP_059592853.1)
nucl 4,  chlo 4,  nucl_plas 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1  (predict for XP_059592854.1)
nucl 4,  chlo 4,  nucl_plas 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1  (predict for XP_059592855.1)
Subcellular
localization
TargetP
other 6  (predict for XP_002283441.1)
other 6  (predict for XP_059592852.1)
other 6  (predict for XP_059592853.1)
other 6  (predict for XP_059592854.1)
other 6  (predict for XP_059592855.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100258040
vvi-r.5
for
100258040
ath-u.5
for
AT4G10130
gma-u.5
for
100814856
bra-r.6
for
103838901
ppo-u.5
for
18104917
mtr-u.5
for
11439195
mtr-u.5
for
25488486
ghi-r.1
for
121219827
ghi-r.1
for
107910740
bna-r.1
for
106443961
bna-r.1
for
106359691
sot-r.1
for
102603682
nta-r.1
for
107830568
nta-r.1
for
107804450
osa-u.5
for
4345818
osa-u.5
for
4347281
zma-u.5
for
100274479
zma-u.5
for
112529890
tae-r.2
for
123112226
tae-r.2
for
123103985
tae-r.2
for
123121744
hvu-r.1
for
123398738
sbi-r.1
for
8078027
sbi-r.1
for
8063709
bdi-r.1
for
100834032


Ortholog ID: 8530
Species vvi ath gma bra ppo mtr mtr ghi ghi bna bna sot nta nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi
Symbol LOC100258040 AT4G10130 LOC100814856 LOC103838901 LOC18104917 LOC11439195 LOC25488486 LOC121219827 LOC107910740 LOC106443961 LOC106359691 LOC102603682 LOC107830568 LOC107804450 LOC107771555 LOC4345818 LOC4347281 LOC100274479 LOC112529890 LOC123112226 LOC123103985 LOC123121744 LOC123398738 LOC8078027 LOC8063709 LOC100834032
Function* uncharacterized LOC100258040 DNAJ heat shock N-terminal domain-containing protein DPH4 homolog DPH4 homolog uncharacterized LOC18104917 DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog uncharacterized LOC107830568 uncharacterized LOC107804450 uncharacterized LOC107771555 uncharacterized LOC4345818 DPH4 homolog uncharacterized LOC100274479 uncharacterized LOC112529890 DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog DPH4 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo04130 SNARE interactions in vesicular transport 3
ppo03083 Polycomb repressive complex 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 4
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma04141 Protein processing in endoplasmic reticulum 2
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100258040 826604 100814856 103838901 18104917 11439195 25488486 121219827 107910740 106443961 106359691 102603682 107830568 107804450 107771555 4345818 4347281 100274479 112529890 123112226 123103985 123121744 123398738 8078027 8063709 100834032
The preparation time of this page was 2.7 [sec].