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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100258105   DNA ligase 4 
 vvi-r.5   100258105   DNA ligase 4 
 ath-u.5   ATLIG4   DNA ligase IV 
 gma-u.5   100816002   DNA ligase 4 
 bra-r.6   103845154   DNA ligase 4 
 ppo-u.5   7484065   DNA ligase 4 
 mtr-u.5   11441582   DNA ligase 4 
 ghi-r.1   107940281   DNA ligase 4 
 ghi-r.1   121212618   DNA ligase 4 
 bna-r.1   106418524   DNA ligase 4 
 bna-r.1   106371506   DNA ligase 4 
 cit-r.1   102608121   DNA ligase 4 
 sly-u.5   101266429   DNA ligase 4 
 sot-r.1   102578397   DNA ligase 4 
 nta-r.1   107760230   DNA ligase 4 
 nta-r.1   107827172   DNA ligase 4 
 osa-u.5   9269006   putative DNA ligase 4 
 zma-u.5   103645969   putative DNA ligase 4 
 tae-r.2   123190257   putative DNA ligase 4 
 tae-r.2   123054378   putative DNA ligase 4 
 tae-r.2   123046521   putative DNA ligase 4 
 hvu-r.1   123427685   putative DNA ligase 4 
 sbi-r.1   8072302   putative DNA ligase 4 
 bdi-r.1   100844955   putative DNA ligase 4 
 cre-r.1   CHLRE_10g433550v5   uncharacterized protein 

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Top 50 coexpressed genes to 100258105 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100258105 (vvi-u.5 coexpression data)

CoexMap"100258105"


vviLOC100258105 | Entrez gene ID : 100258105      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03450 [list] [network] Non-homologous end-joining (9 genes)
GO BP
GO:0006297 [list] [network] nucleotide-excision repair, DNA gap filling  (4 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (11 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (19 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (111 genes)  IEA  
GO CC
GO:0032807 [list] [network] DNA ligase IV complex  (2 genes)  IEA  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (3 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1602 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
Protein XP_002263967.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_002263967.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_002263967.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100258105
vvi-r.5
for
100258105
ath-u.5
for
ATLIG4
gma-u.5
for
100816002
bra-r.6
for
103845154
ppo-u.5
for
7484065
mtr-u.5
for
11441582
ghi-r.1
for
107940281
ghi-r.1
for
121212618
bna-r.1
for
106418524
bna-r.1
for
106371506
cit-r.1
for
102608121
sly-u.5
for
101266429
sot-r.1
for
102578397
nta-r.1
for
107760230
nta-r.1
for
107827172
osa-u.5
for
9269006
zma-u.5
for
103645969
tae-r.2
for
123190257
tae-r.2
for
123054378
tae-r.2
for
123046521
hvu-r.1
for
123427685
sbi-r.1
for
8072302
bdi-r.1
for
100844955
cre-r.1
for
CHLRE_10g433550v5


Ortholog ID: 11003
Species vvi ath gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100258105 ATLIG4 LOC100816002 LOC103845154 LOC7484065 LOC11441582 LOC107940281 LOC121212618 LOC106418524 LOC106371506 LOC102608121 LOC101266429 LOC102578397 LOC107760230 LOC107827172 LOC9269006 LOC103645969 LOC123190257 LOC123054378 LOC123046521 LOC123427685 LOC8072302 LOC100844955 CHLRE_10g433550v5
Function* DNA ligase 4 DNA ligase IV DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 putative DNA ligase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 2
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03450 Non-homologous end-joining 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta04136 Autophagy - other 2
nta00620 Pyruvate metabolism 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03450 Non-homologous end-joining 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03013 Nucleocytoplasmic transport 2
zma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 3
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 3
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 2
bdi03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100258105 835822 100816002 103845154 7484065 11441582 107940281 121212618 106418524 106371506 102608121 101266429 102578397 107760230 107827172 9269006 103645969 123190257 123054378 123046521 123427685 8072302 100844955 5728031
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