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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100258470   ribonuclease MRP protein subunit POP4 
 vvi-r.5   100258470   ribonuclease MRP protein subunit POP4 
 ath-u.5   POP4   ribonuclease P family protein 
 gma-u.5   100802747   ribonuclease P protein subunit p29 
 gma-u.5   100795942   ribonuclease P protein subunit p29 
 bra-r.6   103866705   uncharacterized LOC103866705 
 ppo-u.5   7476826   ribonuclease MRP protein subunit POP4 
 mtr-u.5   11437421   ribonuclease P protein subunit p29 
 mtr-u.5   112421681   ribonuclease P protein subunit p29 
 ghi-r.1   121202837   uncharacterized LOC121202837 
 ghi-r.1   107905282   uncharacterized LOC107905282 
 bna-r.1   106391291   ribonuclease MRP protein subunit POP4-like 
 bna-r.1   106421121   ribonuclease MRP protein subunit POP4 
 cit-r.1   102620832   ribonuclease MRP protein subunit POP4 
 sly-u.5   101255622   ribonuclease MRP protein subunit POP4 
 sot-r.1   102601211   ribonuclease P protein subunit p29-like 
 sot-r.1   102584232   uncharacterized LOC102584232 
 nta-r.1   107826967   ribonuclease MRP protein subunit POP4 
 nta-r.1   107814246   ribonuclease MRP protein subunit POP4 
 nta-r.1   107788410   ribonuclease MRP protein subunit POP4-like 
 osa-u.5   4339079   ribonuclease MRP protein subunit POP4 
 zma-u.5   103631143   uncharacterized LOC103631143 
 zma-u.5   103630287   ribonuclease P protein subunit p29 
 zma-u.5   100274475   uncharacterized LOC100274475 
 tae-r.2   123182345   ribonuclease P protein subunit p29 
 tae-r.2   123182344   ribonuclease P protein subunit p29 
 tae-r.2   123136790   ribonuclease P protein subunit p29 
 hvu-r.1   123444863   ribonuclease P protein subunit p29-like 
 sbi-r.1   8061802   uncharacterized LOC8061802 
 sbi-r.1   110431010   uncharacterized LOC110431010 
 bdi-r.1   100828026   ribonuclease P protein subunit p29 
 bdi-r.1   100827157   ribonuclease P protein subunit p29 
 cre-r.1   CHLRE_03g184050v5   uncharacterized protein 

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Top 50 coexpressed genes to 100258470 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100258470 (vvi-u.5 coexpression data)

CoexMap"100258470"


vviLOC100258470 | Entrez gene ID : 100258470      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 2 2 2 1 1 2 3 1 3 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03008 [list] [network] Ribosome biogenesis in eukaryotes (287 genes)
GO BP
GO:0001682 [list] [network] tRNA 5'-leader removal  (11 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (198 genes)  IEA  
GO CC
GO:0000172 [list] [network] ribonuclease MRP complex  (5 genes)  IEA  
GO:0030677 [list] [network] ribonuclease P complex  (7 genes)  IEA  
GO MF
GO:0033204 [list] [network] ribonuclease P RNA binding  (2 genes)  IEA  
Protein XP_002275005.1 [sequence] [blastp]
XP_010653520.1 [sequence] [blastp]
XP_010653521.1 [sequence] [blastp]
XP_010653524.1 [sequence] [blastp]
XP_010653525.1 [sequence] [blastp]
XP_059595062.1 [sequence] [blastp]
XP_059595063.1 [sequence] [blastp]
XP_059595064.1 [sequence] [blastp]
XP_059595065.1 [sequence] [blastp]
XP_059595066.1 [sequence] [blastp]
XP_059595067.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_002275005.1)
cyto 6,  nucl 4  (predict for XP_010653520.1)
cyto 6,  nucl 4  (predict for XP_010653521.1)
cyto 6,  nucl 4  (predict for XP_010653524.1)
nucl 5,  cyto 4,  cysk 1  (predict for XP_010653525.1)
cyto 6,  nucl 4  (predict for XP_059595062.1)
cyto 6,  nucl 4  (predict for XP_059595063.1)
cyto 6,  nucl 4  (predict for XP_059595064.1)
cyto 6,  nucl 4  (predict for XP_059595065.1)
cyto 6,  nucl 4  (predict for XP_059595066.1)
cyto 6,  nucl 4  (predict for XP_059595067.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002275005.1)
other 6  (predict for XP_010653520.1)
other 6  (predict for XP_010653521.1)
other 6  (predict for XP_010653524.1)
other 6  (predict for XP_010653525.1)
other 6  (predict for XP_059595062.1)
other 6  (predict for XP_059595063.1)
other 6  (predict for XP_059595064.1)
other 7  (predict for XP_059595065.1)
other 7  (predict for XP_059595066.1)
other 7  (predict for XP_059595067.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100258470
vvi-r.5
for
100258470
ath-u.5
for
POP4
gma-u.5
for
100802747
gma-u.5
for
100795942
bra-r.6
for
103866705
ppo-u.5
for
7476826
mtr-u.5
for
11437421
mtr-u.5
for
112421681
ghi-r.1
for
121202837
ghi-r.1
for
107905282
bna-r.1
for
106391291
bna-r.1
for
106421121
cit-r.1
for
102620832
sly-u.5
for
101255622
sot-r.1
for
102601211
sot-r.1
for
102584232
nta-r.1
for
107826967
nta-r.1
for
107814246
nta-r.1
for
107788410
osa-u.5
for
4339079
zma-u.5
for
103631143
zma-u.5
for
103630287
zma-u.5
for
100274475
tae-r.2
for
123182345
tae-r.2
for
123182344
tae-r.2
for
123136790
hvu-r.1
for
123444863
sbi-r.1
for
8061802
sbi-r.1
for
110431010
bdi-r.1
for
100828026
bdi-r.1
for
100827157
cre-r.1
for
CHLRE_03g184050v5


Ortholog ID: 6247
Species vvi ath gma gma bra ppo mtr mtr ghi ghi bna bna cit sly sot sot nta nta nta osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC100258470 POP4 LOC100802747 LOC100795942 LOC103866705 LOC7476826 LOC11437421 LOC112421681 LOC121202837 LOC107905282 LOC106391291 LOC106421121 LOC102620832 LOC101255622 LOC102601211 LOC102584232 LOC107826967 LOC107814246 LOC107779920 LOC4339079 LOC103631143 LOC103630287 LOC100274475 LOC123182345 LOC123182344 LOC123136790 LOC123444863 LOC8061802 LOC110431010 LOC100828026 LOC100827157 CHLRE_03g184050v5
Function* ribonuclease MRP protein subunit POP4 ribonuclease P family protein ribonuclease P protein subunit p29 ribonuclease P protein subunit p29 uncharacterized LOC103866705 ribonuclease MRP protein subunit POP4 ribonuclease P protein subunit p29 ribonuclease P protein subunit p29 uncharacterized LOC121202837 uncharacterized LOC107905282 ribonuclease MRP protein subunit POP4-like ribonuclease MRP protein subunit POP4 ribonuclease MRP protein subunit POP4 ribonuclease MRP protein subunit POP4 ribonuclease P protein subunit p29-like uncharacterized LOC102584232 ribonuclease MRP protein subunit POP4 ribonuclease MRP protein subunit POP4 uncharacterized LOC107779920 ribonuclease MRP protein subunit POP4 uncharacterized LOC103631143 ribonuclease P protein subunit p29 uncharacterized LOC100274475 ribonuclease P protein subunit p29 ribonuclease P protein subunit p29 ribonuclease P protein subunit p29 ribonuclease P protein subunit p29-like uncharacterized LOC8061802 uncharacterized LOC110431010 ribonuclease P protein subunit p29 ribonuclease P protein subunit p29 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 5
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr00760 Nicotinate and nicotinamide metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03250 Viral life cycle - HIV-1 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03008 Ribosome biogenesis in eukaryotes 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00510 N-Glycan biosynthesis 2
sbi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100258470 818920 100802747 100795942 103866705 7476826 11437421 112421681 121202837 107905282 106391291 106421121 102620832 101255622 102601211 102584232 107826967 107814246 107779920 4339079 103631143 103630287 100274475 123182345 123182344 123136790 123444863 8061802 110431010 100828026 100827157 5717411
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