ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100260813	probable ubiquitin-conjugating enzyme E2 16
vvi-r.5	100260813	probable ubiquitin-conjugating enzyme E2 16
vvi-m.5	100260813	probable ubiquitin-conjugating enzyme E2 16
vvi-u.5	100262599	probable ubiquitin-conjugating enzyme E2 18
ath-u.5	UBC17	ubiquitin-conjugating enzyme 17
ath-u.5	UBC18	ubiquitin-conjugating enzyme 18
ath-u.5	ATUBC2-1	Ubiquitin-conjugating enzyme family protein
gma-u.5	100305572	uncharacterized LOC100305572
gma-u.5	100785024	probable ubiquitin-conjugating enzyme E2 16
bra-r.6	103862470	probable ubiquitin-conjugating enzyme E2 17
bra-r.6	103854364	ubiquitin-conjugating enzyme 15
bra-r.6	103839263	probable ubiquitin-conjugating enzyme E2 18
ppo-u.5	7471931	probable ubiquitin-conjugating enzyme E2 18
ppo-u.5	7480148	probable ubiquitin-conjugating enzyme E2 16
ppo-u.5	7477635	probable ubiquitin-conjugating enzyme E2 18
mtr-u.5	11412171	probable ubiquitin-conjugating enzyme E2 16
ghi-r.1	107909427	probable ubiquitin-conjugating enzyme E2 16
ghi-r.1	107957952	probable ubiquitin-conjugating enzyme E2 18
ghi-r.1	107934253	probable ubiquitin-conjugating enzyme E2 18
bna-r.1	106415585	probable ubiquitin-conjugating enzyme E2 16
bna-r.1	106405958	probable ubiquitin-conjugating enzyme E2 16
bna-r.1	106397105	ubiquitin-conjugating enzyme 15
cit-r.1	102622195	probable ubiquitin-conjugating enzyme E2 16
cit-r.1	102628324	probable ubiquitin-conjugating enzyme E2 16
sly-u.5	101245015	probable ubiquitin-conjugating enzyme E2 18
sly-u.5	101243704	probable ubiquitin-conjugating enzyme E2 16
sot-r.1	102597478	probable ubiquitin-conjugating enzyme E2 18
sot-r.1	102605143	probable ubiquitin-conjugating enzyme E2 16
nta-r.1	107759180	putative ubiquitin-conjugating enzyme E2 18
nta-r.1	107769767	putative ubiquitin-conjugating enzyme E2 16
nta-r.1	107776491	putative ubiquitin-conjugating enzyme E2 18
osa-u.5	4352894	probable ubiquitin-conjugating enzyme E2 18
osa-u.5	4333728	probable ubiquitin-conjugating enzyme E2 18
zma-u.5	100193523	uncharacterized LOC100193523
zma-u.5	100282569	uncharacterized LOC100282569
zma-u.5	100272309	ubiquitin conjugating enzyme 1
tae-r.2	123087280	probable ubiquitin-conjugating enzyme E2 18
tae-r.2	123119069	ubiquitin-conjugating enzyme 15
hvu-r.1	123447129	probable ubiquitin-conjugating enzyme E2 18
hvu-r.1	123397476	ubiquitin-conjugating enzyme 15
sbi-r.1	8054171	probable ubiquitin-conjugating enzyme E2 18
sbi-r.1	8065249	ubiquitin-conjugating enzyme 15
bdi-r.1	100833131	probable ubiquitin-conjugating enzyme E2 18
bdi-r.1	100831205	ubiquitin-conjugating enzyme 15
cre-r.1	CHLRE_02g141450v5	uncharacterized protein

Top 50 coexpressed genes to 100260813 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100260813 (vvi-u.5 coexpression data)

CoexMap"100260813"

[Cytoscape]

Annotation

functional annotation

KEGG

vvi04120 [list] [network] Ubiquitin mediated proteolysis (130 genes)

GO BP

GO CC

GO MF

Protein

XP_002274933.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto_nucl 4, chlo 1, mito 1, golg_plas 1

(predict for XP_002274933.1)

Subcellular
localization
TargetP

chlo 2

(predict for XP_002274933.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100260813	vvi-r.5 for 100260813	vvi-m.5 for 100260813	vvi-u.5 for 100262599	ath-u.5 for UBC17	ath-u.5 for UBC18	ath-u.5 for ATUBC2-1	gma-u.5 for 100305572	gma-u.5 for 100785024	bra-r.6 for 103862470	bra-r.6 for 103854364	bra-r.6 for 103839263	ppo-u.5 for 7471931	ppo-u.5 for 7480148	ppo-u.5 for 7477635	mtr-u.5 for 11412171	ghi-r.1 for 107909427	ghi-r.1 for 107957952	ghi-r.1 for 107934253	bna-r.1 for 106415585	bna-r.1 for 106405958	bna-r.1 for 106397105	cit-r.1 for 102622195	cit-r.1 for 102628324	sly-u.5 for 101245015	sly-u.5 for 101243704	sot-r.1 for 102597478	sot-r.1 for 102605143	nta-r.1 for 107759180	nta-r.1 for 107769767	nta-r.1 for 107776491	osa-u.5 for 4352894	osa-u.5 for 4333728	zma-u.5 for 100193523	zma-u.5 for 100282569	zma-u.5 for 100272309	tae-r.2 for 123087280	tae-r.2 for 123119069	hvu-r.1 for 123447129	hvu-r.1 for 123397476	sbi-r.1 for 8054171	sbi-r.1 for 8065249	bdi-r.1 for 100833131	bdi-r.1 for 100831205	cre-r.1 for CHLRE_02g141450v5

Ortholog

Ortholog ID: 1764

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100260813

LOC100262599

UBC17

UBC18

UBC16

Function^*

probable ubiquitin-conjugating enzyme E2 16

probable ubiquitin-conjugating enzyme E2 18

ubiquitin-conjugating enzyme 17

ubiquitin-conjugating enzyme 18

ubiquitin-conjugating enzyme 16

uncharacterized LOC100305572

probable ubiquitin-conjugating enzyme E2 16

ubiquitin-conjugating enzyme 15

probable ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 17

probable ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 16

probable ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 16

ubiquitin-conjugating enzyme 15-like

probable ubiquitin-conjugating enzyme E2 16

probable ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 16

probable ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 16

putative ubiquitin-conjugating enzyme E2 18

probable ubiquitin-conjugating enzyme E2 18

uncharacterized LOC100282569

ubiquitin conjugating enzyme 1

ubiquitin-conjugating enzyme E2 W

probable ubiquitin-conjugating enzyme E2 18

ubiquitin-conjugating enzyme 15

probable ubiquitin-conjugating enzyme E2 18

ubiquitin-conjugating enzyme 15

probable ubiquitin-conjugating enzyme E2 18

ubiquitin-conjugating enzyme 15

probable ubiquitin-conjugating enzyme E2 18

ubiquitin-conjugating enzyme 15

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	5
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	3
ath00030	Pentose phosphate pathway	2
ath00480	Glutathione metabolism	2
ath04120	Ubiquitin mediated proteolysis	2
ath00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04120	Ubiquitin mediated proteolysis	3
ath04626	Plant-pathogen interaction	2
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	5
gma04144	Endocytosis	3
gma04145	Phagosome	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	11
gma04141	Protein processing in endoplasmic reticulum	4
gma03083	Polycomb repressive complex	2
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04382	Cornified envelope formation	3
ppo00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03420	Nucleotide excision repair	4
ghi03050	Proteasome	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03420	Nucleotide excision repair	4
ghi03050	Proteasome	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	4
bna00620	Pyruvate metabolism	3
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna00030	Pentose phosphate pathway	2
bna00040	Pentose and glucuronate interconversions	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta04120	Ubiquitin mediated proteolysis	4
nta00270	Cysteine and methionine metabolism	2
nta00480	Glutathione metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	4
nta00620	Pyruvate metabolism	4
nta00290	Valine, leucine and isoleucine biosynthesis	3
nta01210	2-Oxocarboxylic acid metabolism	3
nta01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	5
osa04144	Endocytosis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	3
osa00190	Oxidative phosphorylation	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	10
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	5
zma04120	Ubiquitin mediated proteolysis	5
zma04130	SNARE interactions in vesicular transport	4
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	5
tae04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	6
tae03050	Proteasome	5
tae04144	Endocytosis	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3
tae01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	2

Expression

Expression pattern

Entrez Gene ID^*

100260813

100262599

829793

834314

843880

100305572

100785024

103854364

103839263

103868454

7471931

7480148

18099237

11412171

107909427

107934253

107936522

106405958

106453810

102622195

102628324

101245015

101243704

102597478

102605143

107759180

107796639

107799066

4352894

4333728

100282569

100272309

100280549

123087280

123095689

123110067

123447129

123397476

8054171

8065249

100833131

100831205

5720433

The preparation time of this page was 0.2 [sec].


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	3	1	3	3	2	2	2	3	2	3	2	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100260813 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100260813 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**