ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	NDHM	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
vvi-r.5	NDHM	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
vvi-m.5	NDHM	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
ath-u.5	NdhM	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
gma-u.5	100794966	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
gma-u.5	100527195	uncharacterized LOC100527195
ppo-u.5	7469178	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
ppo-u.5	112326486	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
mtr-u.5	25489711	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
ghi-r.1	107949517	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
ghi-r.1	107939553	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
bna-r.1	125605088	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
bna-r.1	106389758	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
bna-r.1	106361389	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
cit-r.1	102627248	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
sly-u.5	ORR	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
sot-r.1	102594922	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
nta-r.1	107809027	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
nta-r.1	107828798	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like
osa-u.5	4336530	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like
zma-u.5	100277720	uncharacterized LOC100277720
tae-r.2	123189930	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
tae-r.2	123054043	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
tae-r.2	123046158	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
hvu-r.1	123430589	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
sbi-r.1	8083329	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
bdi-r.1	100822606	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0016655 [list] [network] oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

(13 genes)

IEA

Protein

NP_001384758.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 4, nucl 1

(predict for NP_001384758.1)

Subcellular
localization
TargetP

mito 3, other 3

(predict for NP_001384758.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for NDHM	vvi-r.5 for NDHM	vvi-m.5 for NDHM	ath-u.5 for NdhM	gma-u.5 for 100794966	gma-u.5 for 100527195	ppo-u.5 for 7469178	ppo-u.5 for 112326486	mtr-u.5 for 25489711	ghi-r.1 for 107949517	ghi-r.1 for 107939553	bna-r.1 for 125605088	bna-r.1 for 106389758	bna-r.1 for 106361389	cit-r.1 for 102627248	sly-u.5 for ORR	sot-r.1 for 102594922	nta-r.1 for 107809027	nta-r.1 for 107828798	osa-u.5 for 4336530	zma-u.5 for 100277720	tae-r.2 for 123189930	tae-r.2 for 123054043	tae-r.2 for 123046158	hvu-r.1 for 123430589	sbi-r.1 for 8083329	bdi-r.1 for 100822606

Ortholog

Ortholog ID: 9900

Species

vvi

ath

gma

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NDHM

NdhM

ORR

Function^*

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

uncharacterized LOC100527195

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like

uncharacterized LOC100277720

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi00260	Glycine, serine and threonine metabolism	4
vvi00630	Glyoxylate and dicarboxylate metabolism	4
vvi01230	Biosynthesis of amino acids	3
vvi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00630	Glyoxylate and dicarboxylate metabolism	4
gma01200	Carbon metabolism	4
gma00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	6
gma00630	Glyoxylate and dicarboxylate metabolism	4
gma00260	Glycine, serine and threonine metabolism	3
gma04146	Peroxisome	2
gma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	5
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00630	Glyoxylate and dicarboxylate metabolism	3
mtr01200	Carbon metabolism	2
mtr04146	Peroxisome	2
mtr00195	Photosynthesis	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	8
ghi00630	Glyoxylate and dicarboxylate metabolism	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi00195	Photosynthesis	3
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	10
ghi00710	Carbon fixation by Calvin cycle	8
ghi00630	Glyoxylate and dicarboxylate metabolism	8
ghi00195	Photosynthesis	4
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	4
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	4
sly00260	Glycine, serine and threonine metabolism	2
sly00630	Glyoxylate and dicarboxylate metabolism	2
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	7
sot01200	Carbon metabolism	6
sot00710	Carbon fixation by Calvin cycle	4
sot00630	Glyoxylate and dicarboxylate metabolism	3
sot00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00630	Glyoxylate and dicarboxylate metabolism	6
nta01200	Carbon metabolism	6
nta04146	Peroxisome	6
nta00380	Tryptophan metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00630	Glyoxylate and dicarboxylate metabolism	9
nta01200	Carbon metabolism	9
nta04146	Peroxisome	5
nta00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00710	Carbon fixation by Calvin cycle	4
osa00010	Glycolysis / Gluconeogenesis	2
osa00030	Pentose phosphate pathway	2
osa00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	4
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	5
tae00710	Carbon fixation by Calvin cycle	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	5
tae00710	Carbon fixation by Calvin cycle	3
tae00260	Glycine, serine and threonine metabolism	2
tae00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	3
hvu01200	Carbon metabolism	3
hvu00710	Carbon fixation by Calvin cycle	2
hvu00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	9
bdi00630	Glyoxylate and dicarboxylate metabolism	6
bdi00710	Carbon fixation by Calvin cycle	5
bdi00260	Glycine, serine and threonine metabolism	3
bdi04146	Peroxisome	3

Expression

Expression pattern

Entrez Gene ID^*

100264425

3770591

100794966

100527195

7469178

112326486

25489711

107949517

107939553

125605088

106389758

106361389

102627248

101247812

102594922

107809027

107828798

4336530

100277720

123189930

123054043

123046158

123430589

8083329

100822606

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NDHM (vvi-u.5 coexpression data)

Top 50 enrichment test to NDHM (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bra
Paralog	3	1	2	2	1	2	3	1	1	1	2	1	1	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NDHM (vvi-u.5 coexpression data)

Top 50 enrichment test to NDHM (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**