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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100268126   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 vvi-r.5   100268126   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 vvi-m.5   100268126   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 ath-u.5   Lhca6   PSI type II chlorophyll a/b-binding protein (Lhca2*1) 
 gma-u.5   100812066   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 gma-u.5   100800374   chlorophyll a-b binding protein, chloroplastic-like 
 bra-r.6   103835863   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 ppo-u.5   18100311   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 mtr-u.5   11440680   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 ghi-r.1   107929879   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 ghi-r.1   107932194   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 bna-r.1   106431840   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 bna-r.1   106361964   photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like 
 cit-r.1   102607051   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 sly-u.5   101252151   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 sot-r.1   102580711   chlorophyll a-b binding protein, chloroplastic 
 nta-r.1   107785376   photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like 
 nta-r.1   107815659   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 osa-u.5   4347166   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 zma-u.5   100273427   Photosystem I chlorophyll a/b-binding protein 6 chloroplastic 
 tae-r.2   123121545   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 tae-r.2   123111982   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 tae-r.2   123103760   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 hvu-r.1   123397504   photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like 
 sbi-r.1   8155454   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 sbi-r.1   110432811   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 
 bdi-r.1   100843497   photosystem I chlorophyll a/b-binding protein 6, chloroplastic 

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Top 50 coexpressed genes to 100268126 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100268126 (vvi-u.5 coexpression data)

CoexMap"100268126"


vviLOC100268126 | Entrez gene ID : 100268126    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 1 1 2 2 1 1 1 2 1 1 3 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00196 [list] [network] Photosynthesis - antenna proteins (18 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (18 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (103 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (2991 genes)  IEA  
GO MF
Protein XP_002277280.1 [sequence] [blastp]
XP_059596669.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002277280.1)
extr 5,  chlo 1,  nucl 1,  cyto_E.R. 1,  cyto 1,  E.R. 1  (predict for XP_059596669.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002277280.1)
scret 5  (predict for XP_059596669.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100268126
vvi-r.5
for
100268126
vvi-m.5
for
100268126
ath-u.5
for
Lhca6
gma-u.5
for
100812066
gma-u.5
for
100800374
bra-r.6
for
103835863
ppo-u.5
for
18100311
mtr-u.5
for
11440680
ghi-r.1
for
107929879
ghi-r.1
for
107932194
bna-r.1
for
106431840
bna-r.1
for
106361964
cit-r.1
for
102607051
sly-u.5
for
101252151
sot-r.1
for
102580711
nta-r.1
for
107785376
nta-r.1
for
107815659
osa-u.5
for
4347166
zma-u.5
for
100273427
tae-r.2
for
123121545
tae-r.2
for
123111982
tae-r.2
for
123103760
hvu-r.1
for
123397504
sbi-r.1
for
8155454
sbi-r.1
for
110432811
bdi-r.1
for
100843497


Ortholog ID: 9787
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi
Symbol LOC100268126 Lhca6 LOC100812066 LOC100800374 LOC103835863 LOC18100311 LOC11440680 LOC107929879 LOC107932194 LOC106431840 LOC106361964 LOC102607051 LOC101252151 LOC102580711 LOC107785376 LOC107815659 LOC4347166 LOC100273427 LOC123121545 LOC123111982 LOC123103760 LOC123397504 LOC8155454 LOC110432811 LOC100843497
Function* photosystem I chlorophyll a/b-binding protein 6, chloroplastic PSI type II chlorophyll a/b-binding protein (Lhca2*1) photosystem I chlorophyll a/b-binding protein 6, chloroplastic chlorophyll a-b binding protein, chloroplastic-like photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic chlorophyll a-b binding protein, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic Photosystem I chlorophyll a/b-binding protein 6 chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic-like photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic photosystem I chlorophyll a/b-binding protein 6, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 4
vvi00195 Photosynthesis 4
vvi00196 Photosynthesis - antenna proteins 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00195 Photosynthesis 2
ath00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 3
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 9
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 3
mtr00195 Photosynthesis 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00860 Porphyrin metabolism 2
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00196 Photosynthesis - antenna proteins 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 10
bna01200 Carbon metabolism 10
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 8
bna01200 Carbon metabolism 8
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 4
sly01200 Carbon metabolism 2
sly00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot00195 Photosynthesis 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
sot00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 5
nta01200 Carbon metabolism 5
nta00710 Carbon fixation by Calvin cycle 3
nta00500 Starch and sucrose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta00710 Carbon fixation by Calvin cycle 4
nta00260 Glycine, serine and threonine metabolism 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 8
tae01200 Carbon metabolism 8
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 9
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 15
tae00710 Carbon fixation by Calvin cycle 15
tae01200 Carbon metabolism 15
tae00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu00195 Photosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00196 Photosynthesis - antenna proteins 2
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi00195 Photosynthesis 2
sbi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00710 Carbon fixation by Calvin cycle 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100268126 838498 100812066 100800374 103835863 18100311 11440680 107929879 107932194 106431840 106361964 102607051 101252151 102580711 107785376 107815659 4347166 100273427 123121545 123111982 123103760 123397504 8155454 110432811 100843497
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