ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100273275	Protein LIKE COV 1
zma-r.6	100273275	Protein LIKE COV 1
zma-u.5	100285618	COV1-like protein
zma-u.5	100304197	LCV3
zma-u.5	100193766	Protein LIKE COV 1
sbi-r.1	8062382	protein LIKE COV 2
sbi-r.1	8080385	protein LIKE COV 1
sbi-r.1	8077165	protein LIKE COV 2
osa-u.5	4325049	protein LIKE COV 2
osa-u.5	4328974	protein LIKE COV 1
tae-r.2	123071548	protein LIKE COV 2
tae-r.2	123057261	protein LIKE COV 2
tae-r.2	123063967	protein LIKE COV 1
hvu-r.1	123446602	protein LIKE COV 2-like
hvu-r.1	123444796	protein LIKE COV 2-like
hvu-r.1	123448856	protein LIKE COV 1-like
bdi-r.1	100826212	protein LIKE COV 2
bdi-r.1	100837254	protein LIKE COV 2
bdi-r.1	100843068	protein LIKE COV 1
ath-u.5	COV1	CONTINUOUS VASCULAR RING protein (DUF502)
ath-u.5	LCV1	uncharacterized protein
gma-u.5	100305375	uncharacterized LOC100305375
gma-u.5	100792693	uncharacterized LOC100792693
gma-u.5	100801920	protein LIKE COV 2
sly-u.5	101249632	protein LIKE COV 2
sly-u.5	101255752	protein LIKE COV 3
bra-r.6	103848382	protein CONTINUOUS VASCULAR RING 1
bra-r.6	103828616	protein CONTINUOUS VASCULAR RING 1
vvi-u.5	100262854	protein CONTINUOUS VASCULAR RING 1
vvi-u.5	100266324	protein LIKE COV 2
ppo-u.5	18100417	protein CONTINUOUS VASCULAR RING 1
ppo-u.5	7458770	protein CONTINUOUS VASCULAR RING 1
ppo-u.5	7467805	protein LIKE COV 2
mtr-u.5	11406550	protein LIKE COV 1
mtr-u.5	11407577	protein LIKE COV 1
ghi-r.1	107901242	protein CONTINUOUS VASCULAR RING 1
ghi-r.1	107907206	protein CONTINUOUS VASCULAR RING 1
ghi-r.1	107914405	protein LIKE COV 2
bna-r.1	106361787	protein CONTINUOUS VASCULAR RING 1
bna-r.1	106357955	protein CONTINUOUS VASCULAR RING 1
sot-r.1	102584144	protein LIKE COV 2-like
sot-r.1	102595014	protein CONTINUOUS VASCULAR RING 1-like
sot-r.1	102601749	protein LIKE COV 2-like
cit-r.1	102620902	hypothetical protein
cit-r.1	102621365	protein LIKE COV 2
cit-r.1	102610617	hypothetical protein
nta-r.1	107813890	protein LIKE COV 2
cre-r.1	CHLRE_17g741050v5	uncharacterized protein

Top 50 coexpressed genes to 100273275 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100273275 (zma-u.5 coexpression data)

CoexMap"100273275"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005794 [list] [network] Golgi apparatus

(572 genes)

IEA

GO MF

Protein

NP_001141188.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, E.R. 1, golg 1

(predict for NP_001141188.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001141188.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100273275	zma-r.6 for 100273275	zma-u.5 for 100285618	zma-u.5 for 100304197	zma-u.5 for 100193766	sbi-r.1 for 8062382	sbi-r.1 for 8080385	sbi-r.1 for 8077165	osa-u.5 for 4325049	osa-u.5 for 4328974	tae-r.2 for 123071548	tae-r.2 for 123057261	tae-r.2 for 123063967	hvu-r.1 for 123446602	hvu-r.1 for 123444796	hvu-r.1 for 123448856	bdi-r.1 for 100826212	bdi-r.1 for 100837254	bdi-r.1 for 100843068	ath-u.5 for COV1	ath-u.5 for LCV1	gma-u.5 for 100305375	gma-u.5 for 100792693	gma-u.5 for 100801920	sly-u.5 for 101249632	sly-u.5 for 101255752	bra-r.6 for 103848382	bra-r.6 for 103828616	vvi-u.5 for 100262854	vvi-u.5 for 100266324	ppo-u.5 for 18100417	ppo-u.5 for 7458770	ppo-u.5 for 7467805	mtr-u.5 for 11406550	mtr-u.5 for 11407577	ghi-r.1 for 107901242	ghi-r.1 for 107907206	ghi-r.1 for 107914405	bna-r.1 for 106361787	bna-r.1 for 106357955	sot-r.1 for 102584144	sot-r.1 for 102595014	sot-r.1 for 102601749	cit-r.1 for 102620902	cit-r.1 for 102621365	cit-r.1 for 102610617	nta-r.1 for 107813890	cre-r.1 for CHLRE_17g741050v5

Ortholog

Ortholog ID: 805

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

COV1

LCV1

LCV2

Function^*

LCV3

COV1-like protein

protein LIKE COV 1

protein LIKE COV 2

protein LIKE COV 1

protein LIKE COV 2

protein LIKE COV 2-like

protein LIKE COV 1-like

protein LIKE COV 2

protein LIKE COV 1

CONTINUOUS VASCULAR RING protein (DUF502)

uncharacterized protein

uncharacterized LOC100792693

protein LIKE COV 2

protein LIKE COV 1

protein LIKE COV 2

protein LIKE COV 3

protein CONTINUOUS VASCULAR RING 1

protein LIKE COV 2

protein CONTINUOUS VASCULAR RING 1

protein LIKE COV 2

protein LIKE COV 1

protein LIKE COV 2

protein CONTINUOUS VASCULAR RING 1

protein LIKE COV 2

protein LIKE COV 2-like

protein LIKE COV 2

protein LIKE COV 2-like

hypothetical protein

protein LIKE COV 2

hypothetical protein

protein LIKE COV 2

protein CONTINUOUS VASCULAR RING 1-like

protein LIKE COV 1-like

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00600	Sphingolipid metabolism	3
tae00561	Glycerolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	4
tae00513	Various types of N-glycan biosynthesis	4
tae04141	Protein processing in endoplasmic reticulum	4
tae00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	9
tae00513	Various types of N-glycan biosynthesis	9
tae04141	Protein processing in endoplasmic reticulum	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	9
ath04145	Phagosome	5
ath00510	N-Glycan biosynthesis	2
ath04148	Efferocytosis	2
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	7
gma00640	Propanoate metabolism	4
gma00785	Lipoic acid metabolism	3
gma01210	2-Oxocarboxylic acid metabolism	3
gma00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	3
gma00513	Various types of N-glycan biosynthesis	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo04145	Phagosome	4
ppo00500	Starch and sucrose metabolism	2
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi04382	Cornified envelope formation	6
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot00062	Fatty acid elongation	2
sot01040	Biosynthesis of unsaturated fatty acids	2
sot01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00260	Glycine, serine and threonine metabolism	2
nta00270	Cysteine and methionine metabolism	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	4

Expression

Expression pattern

Entrez Gene ID^*

100304197

100193368

8080385

8068965

8063258

4325049

4328974

4339401

123071548

123134722

123182145

123446602

123444796

123448856

100826212

100843068

816531

816532

840912

100792693

100801920

100800188

101249632

101255752

103860245

100262854

100266324

18100417

7467805

11406550

11423678

107901242

107961349

107945504

125577023

106437681

102584144

102601749

102620902

102621365

102610617

107813890

107794999

107799580

5726652

The preparation time of this page was 4.4 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	3	3	3	2	3	2	2	2	3	2	3	2	3	3	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100273275 (zma-u.5 coexpression data)

Top 50 enrichment test to 100273275 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**