ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100283284	cysteine protease 1
zma-r.6	100283284	cysteine protease 1
zma-u.5	100283826	cysteine protease 1
zma-u.5	100283896	cysteine protease 1
zma-u.5	100037824	cysteine protease component of protease-inhibitor complex
osa-u.5	4337223	oryzain alpha chain-like
osa-u.5	4337351	oryzain beta chain-like
ath-u.5	CP1	cysteine proteinase1
ath-u.5	RD21B	Granulin repeat cysteine protease family protein
ath-u.5	RD21A	Granulin repeat cysteine protease family protein
gma-u.5	100804015	cysteine proteinase RD21a-like
gma-u.5	100499797	cysteine proteinase COT44
gma-u.5	100787154	cysteine proteinase COT44
sly-u.5	101246709	low-temperature-induced cysteine proteinase-like
sly-u.5	101246103	cysteine proteinase mucunain-like
sly-u.5	101256135	cysteine proteinase mucunain-like
vvi-u.5	100252080	cysteine proteinase mucunain
vvi-u.5	100241957	cysteine proteinase mucunain
vvi-u.5	100261257	cysteine proteinase mucunain
ppo-u.5	7489749	cysteine proteinase COT44
ppo-u.5	7492056	cysteine proteinase mucunain
ppo-u.5	7462593	cysteine proteinase mucunain
mtr-u.5	11424546	low-temperature-induced cysteine proteinase
mtr-u.5	25485433	low-temperature-induced cysteine proteinase
mtr-u.5	25493487	cysteine proteinase COT44

Top 50 coexpressed genes to 100283284 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100283284 (zma-u.5 coexpression data)

CoexMap"100283284"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006508 [list] [network] proteolysis

(984 genes)

IEA

GO CC

GO MF

GO:0008234 [list] [network] cysteine-type peptidase activity

(280 genes)

IEA

Protein

NP_001149658.2 [sequence] [blastp]

Subcellular
localization
wolf

extr 4, vacu 2, golg 2, chlo 1, mito 1, E.R. 1, chlo_mito 1

(predict for NP_001149658.2)

Subcellular
localization
TargetP

scret 9

(predict for NP_001149658.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100283284	zma-r.6 for 100283284	zma-u.5 for 100283826	zma-u.5 for 100283896	zma-u.5 for 100037824	osa-u.5 for 4337223	osa-u.5 for 4337351	ath-u.5 for CP1	ath-u.5 for RD21B	ath-u.5 for RD21A	gma-u.5 for 100804015	gma-u.5 for 100499797	gma-u.5 for 100787154	sly-u.5 for 101246709	sly-u.5 for 101246103	sly-u.5 for 101256135	vvi-u.5 for 100252080	vvi-u.5 for 100241957	vvi-u.5 for 100261257	ppo-u.5 for 7489749	ppo-u.5 for 7492056	ppo-u.5 for 7462593	mtr-u.5 for 11424546	mtr-u.5 for 25485433	mtr-u.5 for 25493487

Ortholog

Ortholog ID: 924

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RD21B

CP1

CYP1

Function^*

cysteine protease 1

oryzain beta chain

oryzain alpha chain

oryzain alpha chain-like

oryzain beta chain-like

oryzain beta chain

oryzain alpha chain

oryzain alpha chain-like

oryzain beta chain-like

oryzain beta chain

oryzain alpha chain

Granulin repeat cysteine protease family protein

cysteine proteinase1

probable cysteine protease RD21B

cysteine proteinase RD21A

low-temperature-induced cysteine proteinase

cysteine proteinase RD21A

cysteine proteinase mucunain

low-temperature-induced cysteine proteinase

probable cysteine protease RD21B

cysteine proteinase COT44-like

probable cysteine protease RD21B

cysteine proteinase COT44-like

low-temperature-induced cysteine proteinase

cysteine proteinase mucunain

low-temperature-induced cysteine proteinase-like

cysteine proteinase COT44-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	4
sbi00561	Glycerolipid metabolism	3
sbi00010	Glycolysis / Gluconeogenesis	2
sbi00053	Ascorbate and aldarate metabolism	2
sbi00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00450	Selenocompound metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	8
tae04075	Plant hormone signal transduction	6
tae00190	Oxidative phosphorylation	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	10
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
hvu00220	Arginine biosynthesis	4
hvu00250	Alanine, aspartate and glutamate metabolism	3
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	5
bdi00510	N-Glycan biosynthesis	4
bdi00513	Various types of N-glycan biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01250	Biosynthesis of nucleotide sugars	3
ath00520	Amino sugar and nucleotide sugar metabolism	2
ath04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	2
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	8
gma04626	Plant-pathogen interaction	5
gma04016	MAPK signaling pathway - plant	3
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4
vvi04626	Plant-pathogen interaction	2
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	6
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	4
mtr00260	Glycine, serine and threonine metabolism	3
mtr00630	Glyoxylate and dicarboxylate metabolism	3
mtr00670	One carbon pool by folate	3
mtr01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00944	Flavone and flavonol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00052	Galactose metabolism	5
bna00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	5
sot00010	Glycolysis / Gluconeogenesis	3
sot00620	Pyruvate metabolism	3
sot00710	Carbon fixation by Calvin cycle	3
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04142	Lysosome	3
cit00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	10
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
nta00941	Flavonoid biosynthesis	3
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	6
nta00350	Tyrosine metabolism	4
nta00220	Arginine biosynthesis	2
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	3

Expression

Expression pattern

Entrez Gene ID^*

100283284

100283826

8070301

110436266

4337223

4337351

100037638

123054921

123428136

123428418

100831793

100831807

834321

829841

100806968

100805702

543614

103833094

100241957

100261257

7490053

18104848

11424546

25485433

107908889

107932953

106371587

106439437

102586404

102627349

102623323

107768587

107803197

5723238

The preparation time of this page was 0.3 [sec].


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100283284 (zma-u.5 coexpression data)

Top 50 enrichment test to 100283284 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**