ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100305961	uncharacterized LOC100305961
gma-r.7	100305961	uncharacterized LOC100305961
gma-u.5	100807979	ATP-dependent DNA helicase Q-like 1
gma-u.5	100820624	high mobility group B protein 14
gma-u.5	100819349	FACT complex subunit SSRP1
mtr-u.5	11407325	HMG1/2-like protein
mtr-u.5	11405962	high mobility group B protein 1
mtr-u.5	11437209	uncharacterized LOC11437209
ppo-u.5	7474442	high mobility group B protein 1
ppo-u.5	7462998	high mobility group B protein 14
ppo-u.5	7465590	high mobility group B protein 7
ath-u.5	AT5G23405	HMG-box (high mobility group) DNA-binding family protein
ath-u.5	HMGB3	high mobility group B3
ath-u.5	HMGB2	high mobility group B2
vvi-u.5	100246802	high mobility group B protein 1-like
vvi-u.5	100264012	high mobility group B protein 14
vvi-u.5	100257544	high mobility group B2 protein-like
sly-u.5	101247954	high mobility group B protein 1
sly-u.5	101257131	HMG1/2-like protein
sly-u.5	101247480	high mobility group B protein 14
osa-u.5	4330271	HMG1/2-like protein
osa-u.5	4344416	high mobility group B protein 7
osa-u.5	4326858	high mobility group B protein 14
zma-u.5	109944069	HMG1/2-like protein
zma-u.5	100284781	uncharacterized LOC100284781

Top 50 coexpressed genes to 100305961 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100305961 (gma-u.5 coexpression data)

CoexMap"100305961"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001235556.1 [sequence] [blastp]
XP_006572804.1 [sequence] [blastp]
XP_006572805.1 [sequence] [blastp]
XP_006572806.1 [sequence] [blastp]
XP_006572807.1 [sequence] [blastp]
XP_040863655.1 [sequence] [blastp]
XP_040863742.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001235556.1)
nucl 10	(predict for XP_006572804.1)
nucl 10	(predict for XP_006572805.1)
nucl 10	(predict for XP_006572806.1)
nucl 10	(predict for XP_006572807.1)
nucl 10	(predict for XP_040863655.1)
nucl 10	(predict for XP_040863742.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001235556.1)
other 8	(predict for XP_006572804.1)
other 8	(predict for XP_006572805.1)
other 8	(predict for XP_006572806.1)
other 8	(predict for XP_006572807.1)
other 8	(predict for XP_040863655.1)
other 8	(predict for XP_040863742.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100305961	gma-r.7 for 100305961	gma-u.5 for 100807979	gma-u.5 for 100820624	gma-u.5 for 100819349	mtr-u.5 for 11407325	mtr-u.5 for 11405962	mtr-u.5 for 11437209	ppo-u.5 for 7474442	ppo-u.5 for 7462998	ppo-u.5 for 7465590	ath-u.5 for AT5G23405	ath-u.5 for HMGB3	ath-u.5 for HMGB2	vvi-u.5 for 100246802	vvi-u.5 for 100264012	vvi-u.5 for 100257544	sly-u.5 for 101247954	sly-u.5 for 101257131	sly-u.5 for 101247480	osa-u.5 for 4330271	osa-u.5 for 4344416	osa-u.5 for 4326858	zma-u.5 for 109944069	zma-u.5 for 100284781

Ortholog

Ortholog ID: 226

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

HMGB2

HMGB3

HMG

Function^*

uncharacterized LOC100499992

uncharacterized LOC100305957

uncharacterized LOC25481021

high mobility group B protein 7

high mobility group B protein 1

high mobility group B2

high mobility group B3

high mobility group B protein 4

high mobility group B protein 7

high mobility group B2 protein-like

high mobility group B protein 1-like

high mobility group B protein 3

high mobility group B protein 1

high mobility group B protein 4

high mobility group B protein 2

high mobility group B protein 4

group B HMG-box protein

high mobility group B protein 7

HMG1/2-like protein

DNA-binding protein MNB1B

nucleosome/chromatin assembly factor D

HMG1/2-like protein

DNA-binding protein MNB1B

DNA-binding protein MNB1B-like

high mobility group B protein 14

HMG1/2-like protein

DNA-binding protein MNB1B

high mobility group B protein 7

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	5
bra03430	Mismatch repair	3
bra03420	Nucleotide excision repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	11
bna03030	DNA replication	2
bna03410	Base excision repair	2
bna03450	Non-homologous end-joining	2
bna00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00260	Glycine, serine and threonine metabolism	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6
osa03040	Spliceosome	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7
osa03010	Ribosome	6
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	6
zma03420	Nucleotide excision repair	3
zma03430	Mismatch repair	3
zma03440	Homologous recombination	2
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	8
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00380	Tryptophan metabolism	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3
tae04016	MAPK signaling pathway - plant	3
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	5
bdi03082	ATP-dependent chromatin remodeling	4
bdi03440	Homologous recombination	2
bdi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	3
cre03410	Base excision repair	2
cre03420	Nucleotide excision repair	2
cre03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

100499992

100305957

25481021

25485684

7474442

7488016

838658

838659

103845936

103854899

100257544

100246802

107922191

107890968

106345995

106416143

102630695

102577961

101247008

101257131

102583623

107808275

107781188

4330271

4336676

541952

109944069

123172882

780567

123402298

123444045

110436389

110431028

100838667

100821521

5722933

5721401

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	5	3	3	3	3	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100305961 (gma-u.5 coexpression data)

Top 50 enrichment test to 100305961 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**