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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100499993   uncharacterized LOC100499993 
 gma-r.7   100499993   uncharacterized LOC100499993 
 gma-u.5   100810689   H/ACA ribonucleoprotein complex subunit 2-like protein 
 gma-u.5   100804186   H/ACA ribonucleoprotein complex subunit 2-like protein 
 gma-u.5   100305515   uncharacterized LOC100305515 
 mtr-u.5   11443631   H/ACA ribonucleoprotein complex subunit 2-like protein 
 ppo-u.5   7485927   H/ACA ribonucleoprotein complex subunit 2-like protein 
 ath-u.5   AT5G08180   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 
 vvi-u.5   100266210   H/ACA ribonucleoprotein complex subunit 2-like protein 
 sly-u.5   101268074   H/ACA ribonucleoprotein complex subunit 2-like protein 
 osa-u.5   4330603   H/ACA ribonucleoprotein complex subunit 2-like protein 
 osa-u.5   4340741   H/ACA ribonucleoprotein complex subunit 2-like protein 
 zma-u.5   100383935   uncharacterized LOC100383935 
 zma-u.5   100193012   uncharacterized LOC100193012 

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Top 50 coexpressed genes to 100499993 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100499993 (gma-u.5 coexpression data)

CoexMap"100499993"


gmaLOC100499993 | Entrez gene ID : 100499993    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 1 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03008 [list] [network] Ribosome biogenesis in eukaryotes (605 genes)
GO BP
GO:0031120 [list] [network] snRNA pseudouridine synthesis  (8 genes)  IEA  
GO:0031118 [list] [network] rRNA pseudouridine synthesis  (16 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (75 genes)  IEA  
GO CC
GO:0031429 [list] [network] box H/ACA snoRNP complex  (10 genes)  IEA  
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (230 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO MF
GO:0034513 [list] [network] box H/ACA snoRNA binding  (6 genes)  IEA  
Protein NP_001235327.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  pero 1,  golg 1  (predict for NP_001235327.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001235327.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100499993

.
gma-r.7
for
100499993

.
gma-u.5
for
100810689

.
gma-u.5
for
100804186

.
gma-u.5
for
100305515

.
mtr-u.5
for
11443631

.
ppo-u.5
for
7485927

.
ath-u.5
for
AT5G08180

.
vvi-u.5
for
100266210

.
sly-u.5
for
101268074

.
osa-u.5
for
4330603

.
osa-u.5
for
4340741

.
zma-u.5
for
100383935

.
zma-u.5
for
100193012

.


Ortholog ID: 4605
Species ath gma gma sly osa osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sbi sot sot cit bdi nta
Symbol AT5G08180 LOC100499993 LOC100804186 LOC101268074 LOC4340741 LOC4330603 LOC100383935 LOC100193012 LOC103855764 LOC103850685 LOC100266210 LOC7485927 LOC11443631 LOC123138118 LOC123145367 LOC123403425 LOC107926600 LOC107951197 LOC106433867 LOC106384981 CHLRE_16g690500v5 CHLRE_16g688600v5 LOC8071740 LOC8076388 LOC102603701 LOC102600899 LOC102610926 LOC100824602 LOC107793492
Function* Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein uncharacterized LOC100499993 H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein uncharacterized LOC100383935 uncharacterized LOC100193012 H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein uncharacterized protein uncharacterized protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein H/ACA ribonucleoprotein complex subunit 2-like protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
ath03008 Ribosome biogenesis in eukaryotes 5
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03008 Ribosome biogenesis in eukaryotes 6
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma03008 Ribosome biogenesis in eukaryotes 6
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03008 Ribosome biogenesis in eukaryotes 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 9
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 4
zma03008 Ribosome biogenesis in eukaryotes 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03008 Ribosome biogenesis in eukaryotes 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr03030 DNA replication 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03008 Ribosome biogenesis in eukaryotes 4
tae03010 Ribosome 4
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03010 Ribosome 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830714 100499993 100804186 101268074 4340741 4330603 100383935 100193012 103855764 103850685 100266210 7485927 11443631 123138118 123145367 123403425 107926600 107951197 106433867 106384981 5724732 5724750 8071740 8076388 102603701 102600899 102610926 100824602 107793492
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