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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100500085   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 gma-r.7   100500085   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 gma-m.5   100500085   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 gma-u.5   100527490   putative ribulose phosphate 3-epimerase 
 mtr-u.5   25497874   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 mtr-u.5   25490535   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ppo-u.5   112327520   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ath-u.5   AT3G01850   Aldolase-type TIM barrel family protein 
 ath-u.5   AT1G63290   Aldolase-type TIM barrel family protein 
 vvi-u.5   100242409   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 sly-u.5   101262009   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 osa-u.5   4347508   ribulose-phosphate 3-epimerase, cytoplasmic isoform-like 
 zma-u.5   100283478   ribulose-phosphate 3-epimerase 

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Top 50 coexpressed genes to 100500085 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100500085 (gma-u.5 coexpression data)

CoexMap"100500085"


gmaLOC100500085 | Entrez gene ID : 100500085      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00030 [list] [network] Pentose phosphate pathway (106 genes)
gmx00040 [list] [network] Pentose and glucuronate interconversions (188 genes)
gmx00710 [list] [network] Carbon fixation by Calvin cycle (130 genes)
gmx01200 [list] [network] Carbon metabolism (489 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0009052 [list] [network] pentose-phosphate shunt, non-oxidative branch  (12 genes)  IEA  
GO:0006098 [list] [network] pentose-phosphate shunt  (42 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (1295 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0004750 [list] [network] D-ribulose-phosphate 3-epimerase activity  (4 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3089 genes)  IEA  
Protein XP_003553919.1 [sequence] [blastp]
XP_040868934.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  plas 1,  extr 1,  nucl_plas 1  (predict for XP_003553919.1)
cyto 6,  extr 1,  nucl 1,  E.R. 1,  cysk 1,  golg 1,  cysk_nucl 1  (predict for XP_040868934.1)
Subcellular
localization
TargetP
scret 4,  other 4  (predict for XP_003553919.1)
scret 4,  other 4  (predict for XP_040868934.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100500085

.
gma-r.7
for
100500085

.
gma-m.5
for
100500085

.
gma-u.5
for
100527490

.
mtr-u.5
for
25497874

.
mtr-u.5
for
25490535

.
ppo-u.5
for
112327520

.
ath-u.5
for
AT3G01850

.
ath-u.5
for
AT1G63290

.
vvi-u.5
for
100242409

.
sly-u.5
for
101262009

.
osa-u.5
for
4347508

.
zma-u.5
for
100283478

.


Ortholog ID: 8464
Species ath ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot bdi nta nta
Symbol AT3G01850 AT1G63290 LOC100500085 LOC100527490 LOC101262009 LOC4347508 LOC100283478 LOC103838288 LOC100242409 LOC112327520 LOC25497874 LOC25490535 LOC123104304 LOC123112560 LOC123399764 LOC107917647 LOC107926357 LOC106450945 LOC106420253 CHLRE_02g116450v5 LOC8054783 LOC102589630 LOC100841175 LOC107802156 LOC107809939
Function* Aldolase-type TIM barrel family protein Aldolase-type TIM barrel family protein ribulose-phosphate 3-epimerase, cytoplasmic isoform putative ribulose phosphate 3-epimerase ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform uncharacterized protein ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00190 Oxidative phosphorylation 7
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00030 Pentose phosphate pathway 4
ath00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 9
zma04145 Phagosome 7
zma04142 Lysosome 3
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 7
ppo00230 Purine metabolism 3
ppo01232 Nucleotide metabolism 3
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ppo00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
mtr03040 Spliceosome 2
mtr04145 Phagosome 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 5
tae00240 Pyrimidine metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 10
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi00020 Citrate cycle (TCA cycle) 4
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi01200 Carbon metabolism 4
sbi00020 Citrate cycle (TCA cycle) 2
sbi00040 Pentose and glucuronate interconversions 2
sbi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 3
sot04144 Endocytosis 2
sot03050 Proteasome 2
sot00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03050 Proteasome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 7
nta04145 Phagosome 5
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04145 Phagosome 3
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821068 842635 100500085 100527490 101262009 4347508 100283478 103838288 100242409 112327520 25497874 25490535 123104304 123112560 123399764 107917647 107926357 106450945 106420253 5725423 8054783 102589630 100841175 107802156 107809939
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