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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100527160   cyclin-D4-1 
 gma-r.7   100527160   cyclin-D4-1 
 gma-u.5   100811122   cyclin-D3-1 
 gma-u.5   100818190   cyclin-D1-1 
 mtr-u.5   11431822   cyclin-D3-1 
 mtr-u.5   11420885   cyclin-D4-2 
 ppo-u.5   7472682   cyclin-D3-1 
 ppo-u.5   7462589   cyclin-D3-2 
 ath-u.5   CYCD2;1   Cyclin D2;1 
 ath-u.5   CYCD3;2   CYCLIN D3;2 
 bra-r.6   103846805   cyclin-D4-2 
 vvi-u.5   100247298   cyclin-D4-2 
 vvi-u.5   100854424   cyclin-D5-1 
 vvi-u.5   104878152   uncharacterized LOC104878152 
 ghi-r.1   107913282   cyclin-D5-1 
 ghi-r.1   107913300   cyclin-D1-1 
 ghi-r.1   107913401   cyclin-D4-2 
 bna-r.1   106394545   cyclin-D3-2 
 bna-r.1   106394758   cyclin-D1-1-like 
 bna-r.1   106402828   cyclin-D3-3 
 cit-r.1   102621853   cyclin-D3-1 
 cit-r.1   102630732   cyclin-D4-1-like 
 cit-r.1   102628473   cyclin-D3-2 
 sly-u.5   cycD3   cyclin D3.1 
 sly-u.5   cycd3c3   D-type cyclin-3 
 sot-r.1   102587746   cyclin-D2-1-like 
 nta-r.1   107811128   cyclin-D4-1 
 nta-r.1   107782437   cyclin-D4-1-like 
 nta-r.1   107782163   cyclin-D3-2 
 osa-u.5   9272445   cyclin-D1-2 
 osa-u.5   4340499   cyclin-D3-1-like 
 zma-u.5   100285876   cyclin delta-2 
 zma-u.5   100283538   cyclin delta-2 
 tae-r.2   123044173   cyclin-D2-2 
 tae-r.2   123052052   cyclin-D2-2 
 hvu-r.1   123452775   cyclin-D5-2-like 
 hvu-r.1   123425263   cyclin-D2-2-like 
 hvu-r.1   123402224   cyclin-D3-1-like 
 sbi-r.1   8074298   cyclin-D5-2 
 sbi-r.1   8063725   cyclin-D4-1 
 bdi-r.1   100822201   cyclin-D2-2 
 bdi-r.1   100828267   cyclin-D5-1 
 bdi-r.1   100828838   cyclin-D4-1 
 cre-r.1   CHLRE_11g467772v5   uncharacterized protein 
 cre-r.1   CHLRE_06g289750v5   uncharacterized protein 
 cre-r.1   CHLRE_06g284350v5   uncharacterized protein 

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Top 50 coexpressed genes to 100527160 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100527160 (gma-u.5 coexpression data)

CoexMap"100527160"


gmaLOC100527160 | Entrez gene ID : 100527160    
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 1 3 3 3 3 2 1 3 2 2 2 3 2 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (92 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (102 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (157 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (100 genes)  IEA  
Protein XP_014626722.2 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  cyto 2,  E.R._plas 2,  nucl 1,  golg 1,  plas 1,  cyto_pero 1  (predict for XP_014626722.2)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for XP_014626722.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100527160
gma-r.7
for
100527160
gma-u.5
for
100811122
gma-u.5
for
100818190
mtr-u.5
for
11431822
mtr-u.5
for
11420885
ppo-u.5
for
7472682
ppo-u.5
for
7462589
ath-u.5
for
CYCD2;1
ath-u.5
for
CYCD3;2
bra-r.6
for
103846805
vvi-u.5
for
100247298
vvi-u.5
for
100854424
vvi-u.5
for
104878152
ghi-r.1
for
107913282
ghi-r.1
for
107913300
ghi-r.1
for
107913401
bna-r.1
for
106394545
bna-r.1
for
106394758
bna-r.1
for
106402828
cit-r.1
for
102621853
cit-r.1
for
102630732
cit-r.1
for
102628473
sly-u.5
for
cycD3
sly-u.5
for
cycd3c3
sot-r.1
for
102587746
nta-r.1
for
107811128
nta-r.1
for
107782437
nta-r.1
for
107782163
osa-u.5
for
9272445
osa-u.5
for
4340499
zma-u.5
for
100285876
zma-u.5
for
100283538
tae-r.2
for
123044173
tae-r.2
for
123052052
hvu-r.1
for
123452775
hvu-r.1
for
123425263
hvu-r.1
for
123402224
sbi-r.1
for
8074298
sbi-r.1
for
8063725
bdi-r.1
for
100822201
bdi-r.1
for
100828267
bdi-r.1
for
100828838
cre-r.1
for
CHLRE_11g467772v5
cre-r.1
for
CHLRE_06g289750v5
cre-r.1
for
CHLRE_06g284350v5


Ortholog ID: 67
Species gma gma gma mtr mtr ppo ppo ath ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sot nta nta nta osa osa zma zma zma tae tae hvu hvu hvu sbi sbi bdi bdi cre cre cre
Symbol LOC100804102 LOC100807175 LOC100798728 LOC11433995 LOC25489960 LOC7490056 LOC18104838 CYCD3;3 CYCD1;1 CYCD4;1 LOC103862565 LOC103864358 LOC103829523 LOC100247298 LOC104878152 LOC100255261 LOC107899915 LOC107908885 LOC107932943 LOC106402828 LOC106409485 LOC106417667 LOC102630732 LOC102627697 LOC102606606 cycD3 LOC101248769 LOC102583812 LOC107782437 LOC107782163 LOC107776537 LOC4340499 LOC4346937 LOC100273934 LOC103643161 LOC103647502 LOC123052052 LOC123121432 LOC123398931 LOC123451148 LOC123449393 LOC8074298 LOC8078902 LOC100832008 LOC100841255 CHLRE_11g467772v5 CHLRE_06g284350v5 CHLRE_09g414416v5
Function* cyclin-D3-1-like cyclin-D3-3 cyclin-D5-1 cyclin-D5-1 cyclin-D5-1 cyclin-D3-1 cyclin-D3-1 CYCLIN D3;3 CYCLIN D1;1 CYCLIN D4;1 cyclin-D5-1 cyclin-D2-1 cyclin-D3-2 cyclin-D4-2 uncharacterized LOC104878152 cyclin-D1-1 cyclin-D4-2 cyclin-D3-1 cyclin-D3-3 cyclin-D3-3 cyclin-D3-3 cyclin-D4-1-like cyclin-D4-1-like cyclin-D2-2-like cyclin-D5-1 cyclin D3.1 cyclin-D2-1 cyclin-D3-3-like cyclin-D4-1-like cyclin-D3-2 cyclin-D4-1-like cyclin-D3-1-like cyclin-D2-1-like uncharacterized LOC100273934 cyclin-D4-2-like cyclin-D4-1 cyclin-D2-2 cyclin-D2-1 cyclin-D4-1-like cyclin-D5-1-like cyclin-D5-3-like cyclin-D5-2 cyclin-D3-1 cyclin-D5-3 cyclin-D4-2 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00500 Starch and sucrose metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01240 Biosynthesis of cofactors 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot04075 Plant hormone signal transduction 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 6
nta01240 Biosynthesis of cofactors 6
nta01250 Biosynthesis of nucleotide sugars 6
nta00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 5
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta01240 Biosynthesis of cofactors 3
nta01250 Biosynthesis of nucleotide sugars 3
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03030 DNA replication 5
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100804102 100807175 100798728 11433995 25489960 7490056 18104838 824169 843357 836667 103862565 103864358 103829523 100247298 104878152 100255261 107899915 107908885 107932943 106402828 106409485 106417667 102630732 102627697 102606606 543748 101248769 102583812 107782437 107782163 107776537 4340499 4346937 100273934 103643161 103647502 123052052 123121432 123398931 123451148 123449393 8074298 8078902 100832008 100841255 5725073 5720978 5722348
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